Difference between revisions of "Os06g0254600"
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It includes six exons and the length of the second intron is 5kb.It is located on chromosome 6.There are two other caleosin genes-Os06g0254300 and Os06g0254700 in chromosome 6.These three genes get together because tandem duplication.Normally,the expression Os06g0254600 is relatively low in flowers and leaves,whereas expression levels are relatively high in roots.When subjected to drought stress,it's expression are suppressed.Molecular weight of caleosins range from 15KD to 30KD.Caleosins have a significant feature that EF-hand domain in N-terminal can combine Ca2+,a central hydrophobic region and a security protein kinase phosphorylation sites in C-terminal.Caleosins's N-terminal and C-terminal are located in the cytoplasm,however central hydrophobic region are anchored in the phospholipid monolayer membrane. | It includes six exons and the length of the second intron is 5kb.It is located on chromosome 6.There are two other caleosin genes-Os06g0254300 and Os06g0254700 in chromosome 6.These three genes get together because tandem duplication.Normally,the expression Os06g0254600 is relatively low in flowers and leaves,whereas expression levels are relatively high in roots.When subjected to drought stress,it's expression are suppressed.Molecular weight of caleosins range from 15KD to 30KD.Caleosins have a significant feature that EF-hand domain in N-terminal can combine Ca2+,a central hydrophobic region and a security protein kinase phosphorylation sites in C-terminal.Caleosins's N-terminal and C-terminal are located in the cytoplasm,however central hydrophobic region are anchored in the phospholipid monolayer membrane. | ||
| − | Evolution=== | + | ===Evolution=== |
Angiosperms and gymnosperms caleosin genes show at least two common ancestor.MEGA 4.0 software is used to build a phylogenetic tree.The figure shows that the caleosin genes of selaginella, moss and chlamydomonas are located at the bottom of the tree, indicating that caleosins originated in the early greenery.Rice caleosins ,arabidopsis caleosins and gymnosperms caleosins show two large different branches in evolutionary relationships This indicates that angiosperms and gymnosperms caleosin genes have at least two common ancestor. | Angiosperms and gymnosperms caleosin genes show at least two common ancestor.MEGA 4.0 software is used to build a phylogenetic tree.The figure shows that the caleosin genes of selaginella, moss and chlamydomonas are located at the bottom of the tree, indicating that caleosins originated in the early greenery.Rice caleosins ,arabidopsis caleosins and gymnosperms caleosins show two large different branches in evolutionary relationships This indicates that angiosperms and gymnosperms caleosin genes have at least two common ancestor. | ||
| − | |||
==Labs working on this gene== | ==Labs working on this gene== | ||
Revision as of 06:08, 8 June 2014
Os06g0254600 encode a caleosin
Contents
Annotated Information
Function
Os06g0254600 is a stress responsive gene. It encodes the caleosin which mainly lay in oil body or lipid body. Caleosins not only promote formation of oil body but also is related to drought stress.
Expression
It includes six exons and the length of the second intron is 5kb.It is located on chromosome 6.There are two other caleosin genes-Os06g0254300 and Os06g0254700 in chromosome 6.These three genes get together because tandem duplication.Normally,the expression Os06g0254600 is relatively low in flowers and leaves,whereas expression levels are relatively high in roots.When subjected to drought stress,it's expression are suppressed.Molecular weight of caleosins range from 15KD to 30KD.Caleosins have a significant feature that EF-hand domain in N-terminal can combine Ca2+,a central hydrophobic region and a security protein kinase phosphorylation sites in C-terminal.Caleosins's N-terminal and C-terminal are located in the cytoplasm,however central hydrophobic region are anchored in the phospholipid monolayer membrane.
Evolution
Angiosperms and gymnosperms caleosin genes show at least two common ancestor.MEGA 4.0 software is used to build a phylogenetic tree.The figure shows that the caleosin genes of selaginella, moss and chlamydomonas are located at the bottom of the tree, indicating that caleosins originated in the early greenery.Rice caleosins ,arabidopsis caleosins and gymnosperms caleosins show two large different branches in evolutionary relationships This indicates that angiosperms and gymnosperms caleosin genes have at least two common ancestor.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os06g0254600 |
|---|---|
| Description |
Caleosin related family protein |
| Version |
NM_001063838.1 GI:115467407 GeneID:4340664 |
| Length |
7926 bp |
| Definition |
Oryza sativa Japonica Group Os06g0254600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:7995918..8003843 |
| Sequence Coding Region |
7996130..7996310,7996928..7997053,7997929..7998023,7998187..7998272,8003434..8003547 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:7995918..8003843 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:7995918..8003843 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgagggctcaacgaccatcgttggcagctgctggcaatccggtacttgctcttctgtttctatgggttcttagctggggacatgtaacggcggaaattgatatcgccaacatgacggcgctacagaaacatgtttcgttcttcgaccggaacaaggatggcattattactccgtcggagaccattgaaggggttgttgcaatcggttgtgacttcgcatttgctagagaccttgccgccagtgtgcatgctggtcttggtcctaaaacaagccccaaggatgcaccattacctcacttatcgatatacataaacaacatctatagaggaatgcacaggagtgacacaggtgcactagatgctaaaggaaggtttgttcctgcaaagtttgaggaaatattctcgaaacacgcaaaaaatagaccagatgcattgacatccttggaggtcaaagagatgattctagcaaatcgagatccaaatgacccacaatcatggggtgcagctataaaggagtgggggctaatttatggtcttgcgagtgataagaacggatattttcacaaggatagtgtgagaggtatatacgatggtagtgtgttcgtcaagttggagaaagagagggaatcttcacaaagtacagtttgccggagcttatcatttcggagttctgtataa</cdnaseq> |
| Protein Sequence |
<aaseq>MRAQRPSLAAAGNPVLALLFLWVLSWGHVTAEIDIANMTALQKH VSFFDRNKDGIITPSETIEGVVAIGCDFAFARDLAASVHAGLGPKTSPKDAPLPHLSI YINNIYRGMHRSDTGALDAKGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILANRDP NDPQSWGAAIKEWGLIYGLASDKNGYFHKDSVRGIYDGSVFVKLEKERESSQSTVCRS LSFRSSV</aaseq> |
| Gene Sequence |
<dnaseqindica>7534..7714#6791..6916#5821..5915#5572..5657#297..410#21..96#gagagcaattctgcgagacgatgagggctcaacgaccatcgttggcagctgctggcaatccggtacttgctcttctgtttctatgggttcttagctgtaagtccctctggcacctgccttgtttttccagatttttctttttatccaccttcatgttatacagatggattcaaatattcaatgaatgatttcaggctgtaattaaaatgggtgaaaccctttcagccaaaaagaaagtggtggcatacaatttttctaacttgcatgttattatattgctgtgatttttaattaagggggacatgtaacggcggaaattgatatcgccaacatgacggcgctacagaaacatgtttcgttcttcgaccggaacaaggatggcattattactccgtcggagaccattgaaggtgatatgattagctatattgttctgtttaatttgcaatgagttccgagaatattgtgctagtttggtatggagagatatacttaagttcaaaaccgatattttactctagctatatgatttaaattcagaacttcatgtgcactgtagcagccatatataaaaagctagcaaatgcatagttaaggtaatgttatttgagcttgcattaagggtatgttatattgagcgcaagccatagtgataggtgtgcaaaaactatgtgttctaaaaaaaatctacctctatgtggagaagaagagtttttttttaaaccccgcagggtgtatttgtattaaagtagggggaaacattgtacaatagcccaaggctaggagattacaaaagaaaataaaaagaaatatgagagggggagggggactgttagggggaaggggttgggggtacatgtcacgatttacagattaccaatggtacttccacgagtgtacgaagacatggattggatgccccttgttccacttgtgtgccatagccatacttcatcaattgcccgaataaggaggtgccaatcaaagtttggtgaatgagatgtgtggtccagctgctttgctagtaattatggttgatgttgccactgttgatgctgctaaatacgtggcaaatatgtggattcaacatatacggaggcatacatatatccgtcttcgaaaaccactcctgagaggtttttttgtggtttgcgtgaaaaccgtggactaccggtgaagttcgacaaaattttacaaagaacttaacaattttttttctaacttggcatatgcaaaaaccatggattaccggcgaagttcaaaataaaatgtaacgagtttaaattcagttagaatttttcttaacttggccggcttaatattgagtggtttgtgatcatcttgagccaactcgaagcctctggttattgttttataaacctgctcatatggatgttaagaaaacatcaggctccaagagcacgtcaaatttcaattcagagaattttatatttacttagaggttaatataataaggctagagaaaatctgagctaaggtgattcccttaaacctggtctatgtttgaatgagctccttgcagtggtaaatactccccaaatcttaggttccccaaacaccagtctcacctagactatgagatctaataattacacaatccaaacattgaaccagtaactataactctaacttctacagattcttaattgctgcttctcataatctctagcccttaaataaggctttagtttccgtgtttgacaatcaatctactagttagcattttttgggttgaatgctgggggattacttaggttaccgatccatagaaccatagtgcaaaagtttaaccaatcacccaaccggccggttagactctctgttcaccggagccatccgtccgattggcgatcacccattagaatgtggtttagtagttaactacatgtaacatttatatttgagtagtaagtggtctactgcctagttggtccccgagggctctctcactcccacccaccacggatcaattctcgcatttagccggctcagtttatcttaggtcgttgattcacatgagaaaccacctggttcatccgggtcacataagttcaaatgcagtgagggtccttaaagcaaaccaagctgctcatgctattttttccggttattccgttcaaccgccagtcagatccatgtttcttactatatatatgcaacataaggaaagttaggttcactagaacggattccctcatctcaaatgggcagtaagccccatctcaatcaggcacggcgtccgtcacaggctagaagtcactgatgtgaaaagtaatctcaatcgggcaaacggccgtcactgatgaacctatctcaatcgggccctaattgaagcccatcaccgatagctttgacccagactactagtcaaactatagcccgtcacagatgacctatctcaatcggaccacaaatagagcccgtcacagatgactactaaactcaatcgggcctaaactagagcacgtcacagatgatactcatctcaatccggcctaaactatagcccatcacagatgactgtcatcttaatcgggcattaactacaacccgtcacagatgaccatcatctcaatcgggcattaagttgtggcccgtcatagatgagtataatccacaaaaaaaattattttttggctagcctcaggcctttgctagccatgcccgctgcaaaaatgacagaaacacatatatccaatatccccagctccccagcatcacccattcatatatatgcattcacatacacagccatcaatatatttcacacaactacattcacagaacatccattttgatctcatatttcacatccattcacatatttcacatccattcaaatatttatcatatttcacctgcaaaaccgagtaaattggatcaaatatttatttagcaagtattaacataaacataagaaatatatatataaatataaacatcacagttacataatcaatgttcatcattgcctaaacataaaagttcaacaatgttcatcattttagtttaagcctaaacattcctttggggttaattatttcgcggaggatgaagctggctatctcctcgcgaacctcctcaaagctggtaggcagagacttggtaattttgccctacattgtcataattcgagattagttgatcgatcatatatatgtacttcgatgtagttagttagtctatcacaattgagaccaccgacctcaaactcagccaaagtcttcaccttttctctgtacagaaggcgcatgttgtggcacacatggaatccgcattggtcacctatttgttgctttaccgggaagtattttttttggatgagggtgtcatgtcctgtcttcctgaggcctcatctttgcacgtattgggcccacgcttcatctatcgctagttgaatcggggtccaatcatatgcgttcttatcaattctggagttcaggtagtgacatgtactccacttagatgttatgaccaaaaggatccaatgggcactgcggcattaatatagtgaaagttaattagtactgaaggaatgtgtcatgctgttgtatatatttagggaacacacttactattgattataggcgcacataatgtactccttgtctcggcgggaccacaaggtgtcgtagatgtagttgaccattccttgacggtcattctggagatttgtgacatttaccacttgtgaatcaaggaaggcaacttccggtgcattcttctgacaccattgccaacttaacctacatgcaacataaacgatcttgtaagcgagttaaaccgattgttattaccaaattgagttgggcgacaatacttacaaggagtagcacttaatgaggcttgtgtccaccgctcggagcctatagaggtcgaatagatccttgaagtcgaccacgatataatttgttggaccaaggaatggctttcgatcgtgctctccaaggatttcagtagctttattcggcctcctggcgttagatttctccatgtagtatatgtgaaggtccctgcaagcggtgcccattgcggcaagcacgtcatctccaaccaatggcatgcctagttggaactcctgtgaagcaacgcatttcttcttgacctctttgcccttagtctcttcctgccccttgcctagatctagcttccttggatctagaagcgaggcttgcacctttcctcctcttcctctcccctttgcatcggtaaatctctagcctgtggtaaatctcatgtagtaaatctctagcccttaaataaggctttagtttccctgtttgacaatcaatctactagttagcatttcttggttgaatgttgggggattacttaggttatcgatccatatagagtgcaaaagtttaaccaaccacccaacagccggttagactctcggttcatcggaaccgtccgttcgattggcgaccacccattaaactgtggtttaatagttaactacatgtaacatttatatttagtagtaagtggtcaacttcctagttggtccccaagggctatctcgctcccacccaccacggatcaattctcgcatttagtggctcaagttttgttggtgagcttgttaagccagtttatcttacggagtaggtcgattcacatgagaaaccacctggttcatccgggtcacatcagttcaaatgcagtgagggtccttaaagcaaaccaagctccacatgttatttgttccggttattccgttcaaccggtagtcagatccaggtttcttactatatactactacatatgcagcgtttctaacataaggcgagttaggttattcaactcttgtgcttggttaattaattcattcatgattaaggtggccaaaatgcctaacctgggttttggatattcacatgcatggaaattagttttggatcacaattagttgatgtgtgcattagcacataggaaaaagtttaaataccgcaataaactttggatgaaagtctgtatagcatcctgaactttaaaactggacatccaacctcctaaactttgctataccatccatattaccccctaaggtgattttggatgacggttttgcatatttggaagcttagatgaataatttgaataactaatataacatatttgtatatcataagttataagccattaatttatttctatacagtatatcatactattattggtatttatttgtaaatgagagttaataagaagcaaaaagaaatatttcagtcaaaattttaatatatatatctaaagtgtatgacatgatcaaactcacccaacttatatacaaattagacaaaatcactatatgcaaaaccatcttaaggggttcaatttacccttgtataaatggtattgtaaattttaggtggttgaatgtccgatttcgaagttaagggtgttagatggacttacatccaaagtttatgggggttgtttggactttttttctagcacattatattatattggaactagtctctataaaatcactgcaaattaatttatatcttactaacgtatactgcttaatttggattgcaggggttgttgcaatcggttgtgacttcgcatttgctagagaccttgccgccagtgtgcatgctggtcttggtcctaaaacaagccccgtactctctcattccctcccataactctaatccaaaatcatataaaaataatgacttgtttattatgaatttggtccaaaatagagtaactagatatgctatttaatttattgtacacaagggaaaaattgacccggtattgtttccgcattcaaatgcgcagaaggatgcaccattacctcacttatcgatatacataaacaacatctatagaggaatgcacaggagtgacacaggtgcactagatgctaaaggaaggtaacaccaaccacatgcctatatatacatatcttacataaatgttagaagacatcacattatatcatataatgtcaagcatattaacaataatatgtgacacatgtatctaaatagcaagataattacatatttttagttaaatcctttaggagtacatacaaaagaactttagtgagttttgagcatttgctttatatactctatcttttgtttaataagaaatacggagtacaacttttggatgcatattttattccactttacatacattagtaatactatatatacatgattaattaagttatttattaatacatgactatatatacactttacatacattagtaatactatatatacatgattactcaaattcctcccacacactcatttctaatactgtatgtgttgcaatcaatccagaggtcataatagtaactcactacatttttttccttaaatcaaaatgatcatggcatcttcctatatttatttgagtgtagtattgtctatgtgttaccgtaacccaattagtgtaaagttatttattagccaagcctatttaagcctggtctttagaattaattgcatagtctttttgaggtttgataaaacttttggataaaagtggcacgcttttcaaactgctatgcagtgcatttcgtgcaaaaactttctatatgaaagttgctataaaatataagattaatccatttttcaagtttgtaataattaaaactcaattaatcacacattattaccaccttattttgcgtgaaatacttaatctttatcttcatcttcattttcagaagattcaaacaccacctaaggtttggatctatatatattttaaacatgatgattttcaggtttgttcctgcaaagtttgaggaaatattctcgaaacacgcaaaaaatagaccagatgcattgacatccttggaggtcaaagagatgattctagcaaatcgagatccaaatgacccacaatcatggtatttttcttaatatgtttggtcagttactatcaattactcataaaaaaaagtcaattacgctcttagggcaactataagttcactttgaccctttgaactgtatccgaagtttatctgtttacctcaaacttacaatcaccatgttttggttgccatggtggtgattttcactgatgtgcatggtttcctgttaggaattttttttcctttataataggtaaaacccaacctctacaccaacaccaacaccaatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgggggggggggcgcgctaggaaagtgaagttccaaaaccataatagaatacagttgaggatgttaattttcctggttttgaagttgaacgtgaaagggggattgttgtcttaatatatagatcttccattctaaaaacatcattttaagccattacccatatcaaataaaaaaggaaaatgtatgctcttacttaaggttgatgctataagttctaaaatgattttcattaaaacaaaattaaagtttctaacaaaaaatggttacttgtgattacttatgtttaattacacctttttcttgaaaacacaggggtgcagctataaaggagtgggggctaatttatggtcttgcgagtgataagaacggatattttcacaaggatagtgtgagaggtatatacgatggtagtgtgttcgtcaagttggagaaagagagggaatcttcacaaagtacagtttgccggagcttatcatttcggagttctgtataaagtaattgggaaatgaagttataatcacaaatacattgtattgcatcataggtattgttcgtgtacatgcaaaatgccatatttggagaagcactggtatggtagtagagttatggttgcatgactttaatcgttatgattcaaatctcgatttatatgaacattatgtatacatgggtgcactcttaataagatttgagaaaactaatttt</dnaseqindica> 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