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| − | Please input one-sentence summary here.
| + | The rice '''''Os03g0129300''''' was reported as '''''OsGAPDHB''''' in 2014<ref name="ref1" /> by researchers from China. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | [[File:39-Os03g0129300.png|right|thumb|427px|'''Figure 1.''' ''The phenotype of TNG67 and its high aroma mutant SA0420.<ref name="ref1" />.'']] |
| | + | ===Gene Symbol=== |
| | + | *'''''Os03g0129300''''' '''''<=>''''' '''''OsGAPDHB''''', |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''OsGAPDHB''''' has been proven to be involved in the aroma phenotype of SA0420. |
| | + | * The deficiency of '''''OsGAPDHB''''' could increase the fragrance of transgenic lines to the levels higher than that of TNG67 but lower than that of SA0420. |
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| − | ===Expression=== | + | ===Phenotypic analysis=== |
| − | Please input expression information here.
| + | * SA0420 is a dominant aromatic mutant obtained from the TNG67 mutant pool developed by sodium azide treatment in our long-term breeding program. |
| − | | + | * It exhibits an agreeable taro-like flavor in leaves as well as grains and the leaf fragrance can be smelled from early seedling to grain filling stages. Leaves and grains also each exhibit similar growth and decline of fragrance toward maturity (Table 1). |
| − | ===Evolution===
| + | * In addition to aromatic characteristics, SA0420 also possesses a shorter plant height (Fig. 1A), yellow leaf tips and waxy grains (Fig. 1C). A notably higher 2-AP level has been detected both in leaves and grains of SA0420 than in those of TNG67 (Supplemental Fig. S1), consistent with previous observations from other aromatic varieties [3]. |
| − | Please input evolution information here.
| + | * In this study, the protein profiles of TNG67 and SA0420 were compared at different fragrant levels to identify those proteins related to fragrance during the different developmental stages of leaves and grains |
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Department of Agronomy, National Chung Hsing University, Taiwan |
| | + | * Institute of Molecular Biology, National Chung Hsing University, Taiwan |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Lin DG, Chou SY, Wang AZ, Wang YW, Kuo SM, Lai CC, Chen LJ, Wang CS. A |
| | + | proteomic study of rice cultivar TNG67 and its high aroma mutant SA0420. Plant |
| | + | Sci. 2014 Jan;214:20-8. doi: 10.1016/j.plantsci.2013.09.010. Epub 2013 Sep 27. |
| | + | PubMed PMID: 24268160. |
| | + | </ref> |
| | + | |
| | + | </references> |
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| − | ==References==
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| − | Please input cited references here.
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| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GeneName = Os03g0129300|
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| − | Description = Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) (Fragment)|
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| − | Version = NM_001055382.1 GI:115450492 GeneID:4331495|
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| − | Length = 3186 bp|
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| − | Definition = Oryza sativa Japonica Group Os03g0129300, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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| − | AP = Chromosome 3:1640651..1643836|
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| − | CDS = 1640705..1640782,1640864..1640974,1641821..1641982,1642097..1642264,1642347..1642507<br>,1642594..1642655,1642742..1642791,1642911..1643317,1643424..1643559<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008396:1640651..1643836
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008396:1640651..1643836
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggccacacacgcagcgctcgcggcgtcccgcattccggccaccgcccggctgcacagcaaggcggcgtccaagcagagggtggacttcgccgacttctccggactgaggccgggatcgtgctccatcagccacgccgcgagggaggcgtccttctccgatgtccttggctcgcagctcgtcgccagggctaccggagagaacgccgtgagggcgccggctgaggcgaagctcaaggttgccatcaacggcttcggccgcattggccgcaacttcctccggtgctggcacgaacgcgagaactccccgctcgaggtcgtcgtcgtcaacgacagcggaggcgtcaggaacgcatcacaccttctcaagtacgactcgatgctcggcaccttcaaggccgacgtcaagatcgtcgacgaccagaccatcagcgtcgacggcaagctgatcaaggtcgtctccaacagggaccccctcaagctgccatgggctgagctcggcatcgacattgtcatcgagggtaccggagtgttcgtcgacggccccggcgccgggaagcacatccaggccggcgcgaagaaggtcatcatcactgctccggcgaagggtgctgacatccctacctacgtcctcggtgtcaacgagggagactactcccacgaagtggccaacattatcagcaatgcttcctgcacaaccaactgcctcgctccgttcgtcaagatcttggacgaagagttcggaatcgtaaagggaaccatgaccacaactcactcctacaccggcgaccagaggttgctggacgcgtcgcaccgtgacctgaggagggcccgggcggcggcgctgaacatcgtgccgacgagcaccggcgccgcgaaggccgtggcgctggtgctcccgcagctgaaggggaagctcaacggcatcgcgctgcgcgtgccgaccccgaacgtgtccgtggtggacctggtgatcaacaccgtgaagaccggcatcaccgccgacgacgtgaacgccgcgttccgcaaggccgcggcggggccactcagcggcatcctcgacgtctgcgacgtgccgctggtgtccgtcgacttccgctgctccgacgtctcctccaccatcgacgcctcgctcaccatggtcatgggcgacgacatggtcaaggtggtcgcctggtacgacaacgagtggggctacagccaacgcgtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcagggcagcggcgacccactggaggacttctgcaaggacaacccggagaccgacgagtgcaaagtgtacgaaaactaa</cdnaseq>|
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| − | AA = <aaseq>MATHAALAASRIPATARLHSKAASKQRVDFADFSGLRPGSCSIS HAAREASFSDVLGSQLVARATGENAVRAPAEAKLKVAINGFGRIGRNFLRCWHERENS PLEVVVVNDSGGVRNASHLLKYDSMLGTFKADVKIVDDQTISVDGKLIKVVSNRDPLK LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVLGVNEGDY SHEVANIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRR ARAAALNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITA DDVNAAFRKAAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAW YDNEWGYSQRVVDLAHLVASKWPGAAVQGSGDPLEDFCKDNPETDECKVYEN</aaseq>|
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| − | DNA = <dnaseqindica>55..132#214..324#1171..1332#1447..1614#1697..1857#1944..2005#2092..2141#2261..2667#2774..2909#atccagccgagcgagctaaggaaggaagaagcatacaggcggcagcgacgagccatggccacacacgcagcgctcgcggcgtcccgcattccggccaccgcccggctgcacagcaaggcggcgtccaagcaggtgcgcgcgtgcgtgatcttgtggtattatccggctttgcgtgtgaagctacgggtgatctgatgaaatgtgcggttgcagagggtggacttcgccgacttctccggactgaggccgggatcgtgctccatcagccacgccgcgagggaggcgtccttctccgatgtccttggctcgcagctcgtcgccagggtacgtgcctgtgcttagcttagctaacaaattgatctgtagctttctgtttttccttttacctgtgcacaattcagtatttcagataacaaactgtagaatttaccacgcacgttagtatgactacagtttaacctgatgagtaacgtaagatggtcccttttggctatggaaaacagtagtaatcgttgtacataaataaatacagagttttcgttacttgttttttttttagcaaaagtatttatactgctattatatgttacaaacttctggaaattcaatagttgggttctttttaaaaaacaaaaaatgtagtataaacgcaaacgctcacagcgtgtgtagataagacaaaataatcaccttattaatagccgtttttgtgaaataacagcgacatgttgcgtgcttcttcactagatggatgaaactttatctttgctggtagatcacacatgatttacatctctagtctcttatgttggacacaaccaatgagtttttatacttactccatcaatctctagtacatgaatctgaatcgaaaatatcttatattttggaatagatgaaatagaaaataagacatgagctatattgggacaaaccacaacttcaaacggtcaaaaattgcataggacattatcctagttactaatattccgtgcgtgtattacagtactaggtagataaatgttccagtatcatgcactcaagactataatgacaagttggtcaagttatcgtttttggatgcctcgccaaccacaatatcatgtattgtacagacgtgtattctgactgtaagcgcaagtcctgaatgaattgttcaacctgtggcaggctaccggagagaacgccgtgagggcgccggctgaggcgaagctcaaggttgccatcaacggcttcggccgcattggccgcaacttcctccggtgctggcacgaacgcgagaactccccgctcgaggtcgtcgtcgtcaacgacagcggaggcgtcaggaacgtaagtacaagtactcatccttcagaaaagcttgtcctgaacgtaatcaagcacagactaatcaatgactgattccgatataattttgttctctgcgtgtgttaattatttcaggcatcacaccttctcaagtacgactcgatgctcggcaccttcaaggccgacgtcaagatcgtcgacgaccagaccatcagcgtcgacggcaagctgatcaaggtcgtctccaacagggaccccctcaagctgccatgggctgagctcggcatcgacattgtcatcgaggtacacaaatcgacaattgactgtgaactcaatctgcagggaacagaactgacaatgctgcattgctgtgtgtgtcatgaagggtaccggagtgttcgtcgacggccccggcgccgggaagcacatccaggccggcgcgaagaaggtcatcatcactgctccggcgaagggtgctgacatccctacctacgtcctcggtgtcaacgagggagactactcccacgaagtggccaacattatcaggtaagcaaaagcaaacaccaccacttcaatatatatgcatatcaaactctgcaacatgcataagaactctgtttcttgtgttgcagcaatgcttcctgcacaaccaactgcctcgctccgttcgtcaagatcttggacgaagagttcggtaagaactttaatcgctcgccttaacctgaagcacaatacgtatggcaacatgtgtttcctgactgtgttgtgacgcatgtgcaggaatcgtaaagggaaccatgaccacaactcactcctacaccggcgaccaggtcggtcggttttctgatcaaaacgagtaaattgattgatcgatgatcgctgcagcatttcgtacgtgcagaggctgatacattctgcgtgtgctgtgtttgatgattgactaacacagaggttgctggacgcgtcgcaccgtgacctgaggagggcccgggcggcggcgctgaacatcgtgccgacgagcaccggcgccgcgaaggccgtggcgctggtgctcccgcagctgaaggggaagctcaacggcatcgcgctgcgcgtgccgaccccgaacgtgtccgtggtggacctggtgatcaacaccgtgaagaccggcatcaccgccgacgacgtgaacgccgcgttccgcaaggccgcggcggggccactcagcggcatcctcgacgtctgcgacgtgccgctggtgtccgtcgacttccgctgctccgacgtctcctccaccatcgacgcctcgctcaccatggtcatgggcgacgacatggtcaaggtggtcgcctggtacgacaacgagtggggctacaggtgagagcaatcagcaatgcaaacaaacaacacatgttactgcgtgcgttgcaattgcattgctcggcgtctgatcgatcgtgtattcgtgtgcggttttgtgcagccaacgcgtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcagggcagcggcgacccactggaggacttctgcaaggacaacccggagaccgacgagtgcaaagtgtacgaaaactaagaccactgtccaagtacgggctcgcgtaggtgcagaaatatatactcctataatgtaacgaagcacacacattgactgtccccgggcagaactgctatactatatatactgtgctcggattggctgcccgtacgttgttccccttcgacagaggaacgcatgactgtcgaagaagaaacacagctgcagacacgggccattttctgtgaggtgtaatactgaactttggtacagacttcaggatttttttcttttcgagtcttgttttactttcttc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055382.1 RefSeq:Os03g0129300]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
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| − | [[Category:Chromosome 3]]
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