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| − | {{JaponicaGene|
| + | The rice '''''Os06g0613400''''' was reported as '''''OsCOM1''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os06g0613400|
| |
| − | Description = Conserved hypothetical protein|
| |
| − | Version = NM_001064605.1 GI:115468941 GeneID:4341524|
| |
| − | Length = 2715 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0613400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os06g0613400''''' '''<=>''' '''''OsCOM1,COM1''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * COM1/SAE2 is a highly conserved gene from yeast to higher eukaryotes. Its orthologs, known to cooperate with the MRX complex (Mre11/Rad50/Xrs2), are required for meiotic DNA double-strand break (DSB) ends resection and specific mitotic DSB repair events. |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| + | * '''''OsCOM1''''' plays an important role in promoting homologous synapsis and recombination in rice meiosis. |
| − | AP = Chromosome 6:25393545..25396259|
| + | ===Phenotypic analysis=== |
| − | CDS = 25393957..25394929,25395240..25395988|
| + | * The mutant plants showed normal vegetative growth and development, and could not be distinguished from the wild-type plant, but were completely sterile. The male gamete fertility was examined by staining with 1% I 2 -KI solution. |
| − | GCID = <gbrowseImage1>
| + | * Almost all pollen grains in the mutant plant were shrunken, with an irregular appearance, and could not be stained, compared with those from the wild type . |
| − | name=NC_008399:25393545..25396259
| + | * Furthermore, the mutant flowers did not set seeds when pollinated with the wild-type pollens, demonstrating that the mutation prevented both male and female fertility. |
| − | source=RiceChromosome06
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ==Labs working on this gene== |
| − | name=NC_008399:25393545..25396259
| + | * State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China |
| − | source=RiceChromosome06
| + | |
| − | preset=GeneLocation
| + | ==References== |
| − | </gbrowseImage2>| | + | <references> |
| − | CDNA = <cdnaseq>atgaatgcgaatgtgttgggcggcgatgtggtggcggacgatttcaactacttctccggtgtgagcaccatctttgtggccaacatccaggaggtgaaggaccgggtttcccagatcgagctcctcttctgcagccagctcttccctcatgtccaggccatgtggaaggcggccaaggatgcgtggatggagagggaggccgccctattgagccaattggaggagctgagcagcgggaagcggcacgcggaggagaaggcgctgcagctggggtgctcccttgatgagatgaaggggaagcttgcggatgccgagcgatcggtcgcggggcatgaggttgagaagaagcggcttctggggagattggaggaggaaattgggaacaaagatgaggttattcgccggctagagagggagattgcggagaaggctgctgatttttccagggagagagatgcccatcagaggcttttgcagctggttgagttgaaggacaagaatttgcttctcgagcagaataaacggagggatgcggaggagatggcactgcagctggggaactctcttgaggatatgaaggggaactttgagcgattgatcgcgaggcatgaggttgagaaggagcgaattccggggaggttggaggaggaaatggggaaaaaggatgaggttattgggcggctagagagcgagattgcggagaaggctgctgatgtctctagggaaagagatgcccatcagaggatgctgcagcaggttgagttgaaggataaggatctgcttctcgagcagaataagcggaaggacctgatcgaggattacactaagctgaagacactctacaaggatttgaagtctcagtacaactttcttgttggaaagattggccagaatgaaggctccaagtctcctgtagtcaatgtggtggatcggaaaacctccggaagccctccaagcaagagaaagctcaaagatctggtggacactaaaaaggagaacaatcaggcagtatctaagactgtagatgagaaaaatggtcctgcttcaagtgcaaaggcacaaggtacccaccatgctagctcagtcaggagttcattcagtaactcgcgcctttgtctaccgtctcgtacaaccaatcctccaccaaagaatgctactagcaattcaaaaacagaggcagcatctagtttcacccgcccaagtctacactggagggagactcgcgcgcgtaaagaaccaggcgttgtagatccacatgatgatttccttgacacacctctggaggctgtcaaaaatatgatcaggaatcctaaaacgccagaagaagcacaagcccttgctgcctctcctcctaaagatatggacttcaataactctgatgatgagactcaagatgtcaatattgccacccagggccagaaaaacatgccagttcccaagcagcaaagtacaatttcaatccaaccaccaaataaaggtttcaaatacacagaacctgtaagaaaaaaggctgaccgggagaatctgaaaggcgttgagtgcaagcagtgcaagaaattctatgatgctgttcttccagatggccgcacaaatggtgacggtgtggactctacaagcatgaggtgtgagcatcatgatggcgtatccagacatcgctacaggtacgcgccgccgctgacacctgaagggttttggaacattgggtttgaatcagaaatgtag</cdnaseq>|
| + | * <ref name="ref1"> |
| − | AA = <aaseq>MNANVLGGDVVADDFNYFSGVSTIFVANIQEVKDRVSQIELLFC SQLFPHVQAMWKAAKDAWMEREAALLSQLEELSSGKRHAEEKALQLGCSLDEMKGKLA DAERSVAGHEVEKKRLLGRLEEEIGNKDEVIRRLEREIAEKAADFSRERDAHQRLLQL VELKDKNLLLEQNKRRDAEEMALQLGNSLEDMKGNFERLIARHEVEKERIPGRLEEEM GKKDEVIGRLESEIAEKAADVSRERDAHQRMLQQVELKDKDLLLEQNKRKDLIEDYTK LKTLYKDLKSQYNFLVGKIGQNEGSKSPVVNVVDRKTSGSPPSKRKLKDLVDTKKENN QAVSKTVDEKNGPASSAKAQGTHHASSVRSSFSNSRLCLPSRTTNPPPKNATSNSKTE AASSFTRPSLHWRETRARKEPGVVDPHDDFLDTPLEAVKNMIRNPKTPEEAQALAASP PKDMDFNNSDDETQDVNIATQGQKNMPVPKQQSTISIQPPNKGFKYTEPVRKKADREN LKGVECKQCKKFYDAVLPDGRTNGDGVDSTSMRCEHHDGVSRHRYRYAPPLTPEGFWN IGFESEM</aaseq>|
| + | Ji J, Tang D, Wang K, Wang M, Che L, Li M, Cheng Z. The role of OsCOM1 in |
| − | DNA = <dnaseqindica>413..1385#1696..2444#gaaaagctttctcccccatttcaagcggcgcgaacggcggcggcggccggcgaggagggcgacggctagggtttttctctctctccgccgccgaaatcgaatccccgaggtgagctccatctcatacccaccgagtctcaccgtcccgacccatctccttcacccgccgccgccgcctgcgctgccccgccgatcaccgtgagctgctgcagcttccgcctccggtgagcacccgttgccgacggacatcgtcttccttcctcatccatctcgttctacccgctccattcctcgaattcgcattagccttcatcttctcttctggatctggaagcttttctgttcgtcttaaccctagtactaattacagttttttttacccaaaattttttttggtgccctggctgtagagatgaatgcgaatgtgttgggcggcgatgtggtggcggacgatttcaactacttctccggtgtgagcaccatctttgtggccaacatccaggaggtgaaggaccgggtttcccagatcgagctcctcttctgcagccagctcttccctcatgtccaggccatgtggaaggcggccaaggatgcgtggatggagagggaggccgccctattgagccaattggaggagctgagcagcgggaagcggcacgcggaggagaaggcgctgcagctggggtgctcccttgatgagatgaaggggaagcttgcggatgccgagcgatcggtcgcggggcatgaggttgagaagaagcggcttctggggagattggaggaggaaattgggaacaaagatgaggttattcgccggctagagagggagattgcggagaaggctgctgatttttccagggagagagatgcccatcagaggcttttgcagctggttgagttgaaggacaagaatttgcttctcgagcagaataaacggagggatgcggaggagatggcactgcagctggggaactctcttgaggatatgaaggggaactttgagcgattgatcgcgaggcatgaggttgagaaggagcgaattccggggaggttggaggaggaaatggggaaaaaggatgaggttattgggcggctagagagcgagattgcggagaaggctgctgatgtctctagggaaagagatgcccatcagaggatgctgcagcaggttgagttgaaggataaggatctgcttctcgagcagaataagcggaaggacctgatcgaggattacactaagctgaagacactctacaaggatttgaagtctcagtacaactttcttgttggaaagattggccagaatgaaggctccaagtctcctgtagtcaatgtggtggatcggaaaacctccggaagccctccaagcaagagaaagctcaaaggtactcctgccctttgatttcctttcattcagtagagctatttaaaccttgttaatcaatcaccatttttattctctaattactgttacctggaagtttcatttgaagaataccaagttttaattgcaattgtgtactataatccatggtgctctgatcaatgccgcggttgaaagtattattaagcacctttgtaatctgcaagtaatgtcctgccaatgctatcatattagcactaagatctatgcctcctaaatcgatactgattgatgtctgccttagcattttcttttacttgcttgattttcagatctggtggacactaaaaaggagaacaatcaggcagtatctaagactgtagatgagaaaaatggtcctgcttcaagtgcaaaggcacaaggtacccaccatgctagctcagtcaggagttcattcagtaactcgcgcctttgtctaccgtctcgtacaaccaatcctccaccaaagaatgctactagcaattcaaaaacagaggcagcatctagtttcacccgcccaagtctacactggagggagactcgcgcgcgtaaagaaccaggcgttgtagatccacatgatgatttccttgacacacctctggaggctgtcaaaaatatgatcaggaatcctaaaacgccagaagaagcacaagcccttgctgcctctcctcctaaagatatggacttcaataactctgatgatgagactcaagatgtcaatattgccacccagggccagaaaaacatgccagttcccaagcagcaaagtacaatttcaatccaaccaccaaataaaggtttcaaatacacagaacctgtaagaaaaaaggctgaccgggagaatctgaaaggcgttgagtgcaagcagtgcaagaaattctatgatgctgttcttccagatggccgcacaaatggtgacggtgtggactctacaagcatgaggtgtgagcatcatgatggcgtatccagacatcgctacaggtacgcgccgccgctgacacctgaagggttttggaacattgggtttgaatcagaaatgtagcacatgaagtatgatgcgctcttcattgattagtgcagtgtcgtgccctaacataggttctcagtcaccccccagatactgttaataatgtcagtagtaaatctcatgctggggaaatgatcatttctttttttaagattatatgtttggatagaatgccaatttgttgaagatagaatgtacttactgtcacatcgattctatgtaaatgacatctgacattgaaaagcagtcgaataatcttgaataacaagcgttataacgttacttg</dnaseqindica>|
| + | homologous chromosome synapsis and recombination in rice meiosis. Plant J. 2012 |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064605.1 RefSeq:Os06g0613400]|
| + | Oct;72(1):18-30. doi: 10.1111/j.1365-313X.2012.05025.x. Epub 2012 Aug 1. PubMed |
| − | }}
| + | PMID: 22507309. |
| − | [[Category:Genes]] | + | </ref> |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </references> |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 6]] | + | ==Structured Information== |
| − | [[Category:Chromosome 6]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
