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| − | {{JaponicaGene|
| + | The rice '''''Os08g0160500''''' was reported as '''''cslf6''''' in 2012 <ref name="ref1" /> by researchers from USA, Australia and Korea. |
| − | GeneName = Os08g0160500|
| |
| − | Description = Cellulose synthase family protein|
| |
| − | Version = NM_001067583.1 GI:115474902 GeneID:4344719|
| |
| − | Length = 6284 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0160500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os08g0160500''''' '''<=>''' '''''CslF6,OsCslF6''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * The rice '''''CslF6''''' gene mediates the biosynthesis of MLG(Mixed-linkage glucan). |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| + | ===Expression=== |
| − | AP = Chromosome 8:3543380..3549663|
| + | * Rice cslf6 knockout mutants show a slight decrease in height and stem diameter but otherwise grew normally during vegetative development. |
| − | CDS = 3543917..3545710,3546242..3546986,3549035..3549354|
| + | * However, cslf6 mutants display a drastic decrease in MLG content (97% reduction in coleoptiles and virtually undetectable in other tissues). |
| − | GCID = <gbrowseImage1>
| + | * Immunodetection with an anti-MLG monoclonal antibody revealed that the coleoptiles and leaves retain trace amounts of MLG only in specific cell types such as sclerenchyma fibers. |
| − | name=NC_008401:3543380..3549663
| + | * These results correlate with the absence of endogenous MLG synthase activity in mutant seedlings and 4-week-old sheaths. |
| − | source=RiceChromosome08
| + | * Mutant cell walls are weaker in mature stems but not seedlings, and more brittle in both stems and seedlings, compared to wild type. |
| − | preset=GeneLocation
| + | * Mutants also display lesion mimic phenotypes in leaves, which correlates with enhanced defense-related gene expression and enhanced disease resistance. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008401:3543380..3549663
| + | |
| − | source=RiceChromosome08
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Joint BioEnergy Institute, Emeryville, California 94608; |
| − | </gbrowseImage2>| | + | * Divisions of Physical Biosciences and Life Sciences,Lawrence Berkeley National Laboratory, Berkeley, California 94720; |
| − | CDNA = <cdnaseq>atggcgccagcggtggccggcggcggagggaggaggaacaatgagggggtgaacgggaacgcggcggcgccggcgtgcgtgtgcgggttcccggtgtgcgcgtgcgcgggggcggcggcggtggcgtcggcggcgtcgtcggcggacatggacatcgtggcggcggggcagatcggcgccgtcaacgacgagagctgggtcgccgtcgacctcagcgacagcgacgacgcccccgccgccggcgacgtccagggcgccctcgacgaccgccccgtcttccgtaccgagaagatcaagggcgtcctcctccacccctaccgggtgctgatctttgtgaggctgatcgcgttcacactgttcgtgatatggcgtatcgagcacaagaacccggacgcgatgtggctgtgggtgacgtcgatcgccggcgagttctggttcgggttctcgtggctgctcgaccagctccccaagctgaacccgatcaaccgcgtccccgacctcgccgtcctccgccgccgcttcgaccacgccgacgggacctcctccctcccggggctggacatcttcgtcaccaccgccgacccgatcaaggagcccatcctgtcgacggcgaactccatcctctccatcctcgccgccgactaccccgtcgaccgcaacacctgctacctctccgacgactctgggatgctcctcacctacgaggccatggcggaggcggccaagttcgcgacgctgtgggtgcccttctgccggaagcacgccatcgagccgcgcgggcctgagagctacttcgagctcaagtcccacccctacatggggagggcgcaggaggagttcgtcaacgaccgccgccgcgtccgcaaggagtacgacgacttcaaggccaggatcaacggcctcgagcacgacatcaagcagaggtccgactcctacaacgccgccgccggcgtcaaggacggcgagccccgcgccacctggatggccgacgggtcgcagtgggagggcacctggatcgagcagtcggagaaccaccgcaagggcgaccacgccggcatcgtcctggtgttgctgaaccacccgagccacgcacggcagctggggccgccggcgagcgccgacaacccgctggacttcagcggcgtggacgtgcggctgccgatgctggtgtacgtcgcacgtgagaagcgccccgggtgcaaccaccagaagaaggccggcgccatgaacgcgctgacccgcgcctccgccgtgctctccaactcccccttcatcctcaacctcgactgcgaccactacatcaacaactcccaggcgctccgcgccggcatctgcttcatgctcggccgcgacagcgacaccgtcgcgttcgtccagttcccgcagcgcttcgagggcgtcgaccccaccgacctctatgctaaccacaaccgtatcttcttcgacggcacgctccgtgccctcgacgggctgcaggggcctatctacgtcggcaccgggtgtctcttccgccgcatcacgctgtacgggttcgagccgccgaggatcaacgtcggcggaccgtgcttcccgaggctcggtgggatgttcgccaagaacaggtaccagaagcctgggttcgagatgaccaagcctggtgccaagccggtggcgccgccgccggcggcgacggtggcgaaggggaagcacgggttcctgccgatgcccaagaaggcgtacggcaagtcggacgcgttcgccgacaccatcccgcgcgcgtcgcacccgtcgccgtacgcggcggaggcggcggtggcggccgacgaggcggcgatcgcggaggccgtgatggtgacggcggcggcgtacgagaagaagaccgggtgggggagcgacatcgggtgggtgtacggcacggtgacggaggacgtggtgaccggctaccggatgcacatcaaggggtggaggtcgcgctactgctccatctacccgcacgcgttcatcgggacggcgccgatcaacctgacggagaggctgttccaggtgctccggtggtcgacgggttcgctggagatcttcttctcgaggaacaacccgctgttcgggagcacgttcctgcacccgctgcagcgcgtggcgtacatcaacatcaccacctacccgttcacggcgctgttcctcatcttctacaccaccgtgccggcgctgtcgttcgtgacggggcacttcatcgtgcagaggccgaccaccatgttctacgtctacctcgccatcgtgctcgggacgctgctcatcctcgccgtgctggaggtgaagtgggcgggggtcaccgtgttcgagtggttcaggaacgggcagttctggatgacggccagctgctccgcctacctcgccgccgtgctgcaggtggtcaccaaggtggtgttccggcgggacatctcgttcaagctcacctccaagctccccgccggcgacgagaagaaggacccctacgccgacctgtacgtggtgcggtggacgtggctcatgatcacccccatcatcatcatcctcgtcaacatcatcggctccgccgtcgccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtgttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaagcacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgccgtgctctacatcaacatcccccacatccatggccccggccgccacggcgccgcctcaccatcccacggccaccacagcgcccatggcaccaagaagtacgacttcacctacgcctggccatga</cdnaseq>|
| + | * Commonwealth Scientific and Industrial Research Organization Food Futures Flagship and Commonwealth Scientific and Industrial Research Organization Plant Industry, Black Mountain Laboratories, Black Mountain, Australian Capital Territory 2601, Australia; |
| − | AA = <aaseq>MAPAVAGGGGRRNNEGVNGNAAAPACVCGFPVCACAGAAAVASA ASSADMDIVAAGQIGAVNDESWVAVDLSDSDDAPAAGDVQGALDDRPVFRTEKIKGVL LHPYRVLIFVRLIAFTLFVIWRIEHKNPDAMWLWVTSIAGEFWFGFSWLLDQLPKLNP INRVPDLAVLRRRFDHADGTSSLPGLDIFVTTADPIKEPILSTANSILSILAADYPVD RNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRA QEEFVNDRRRVRKEYDDFKARINGLEHDIKQRSDSYNAAAGVKDGEPRATWMADGSQW EGTWIEQSENHRKGDHAGIVLVLLNHPSHARQLGPPASADNPLDFSGVDVRLPMLVYV AREKRPGCNHQKKAGAMNALTRASAVLSNSPFILNLDCDHYINNSQALRAGICFMLGR DSDTVAFVQFPQRFEGVDPTDLYANHNRIFFDGTLRALDGLQGPIYVGTGCLFRRITL YGFEPPRINVGGPCFPRLGGMFAKNRYQKPGFEMTKPGAKPVAPPPAATVAKGKHGFL PMPKKAYGKSDAFADTIPRASHPSPYAAEAAVAADEAAIAEAVMVTAAAYEKKTGWGS DIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGS LEIFFSRNNPLFGSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQR PTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQVVT KVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAK VLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVL YINIPHIHGPGRHGAASPSHGHHSAHGTKKYDFTYAWP</aaseq>|
| + | * Department of Plant Pathology and The Genome Center, University of California, Davis, California 95616 |
| − | DNA = <dnaseqindica>3954..5747#2678..3422#310..629#cctccaaaaaaaaccatttgggtctctctccctttgagagccccctaccgacacttgtttgcccttaatttctatatatcccccacgtactttacgacccatttctcacacccctcttctcctcctcctcttcttctccaccacctccattgctgctcgcctctctcacctcctcctcctcctcttgtgtggagctcgtcggcgtcgaggtgtagctagctagctaagcttgttttgccattgttgtgttcttggtgttcggagagggagcttgcctttgccttgaggggagaggcaaaggcattagcaatggcgccagcggtggccggcggcggagggaggaggaacaatgagggggtgaacgggaacgcggcggcgccggcgtgcgtgtgcgggttcccggtgtgcgcgtgcgcgggggcggcggcggtggcgtcggcggcgtcgtcggcggacatggacatcgtggcggcggggcagatcggcgccgtcaacgacgagagctgggtcgccgtcgacctcagcgacagcgacgacgcccccgccgccggcgacgtccagggcgccctcgacgaccgccccgtcttccgtaccgagaagatcaagggcgtcctcctccacccctaccggtcagctctctcactccctcctccattgctgcactctagcttccacctccaactaattaattaaccgtttcttccccccaaaaaaagaaaaaaaaatccaaaaactaattaaccgtctcctctacaattaaccaatttagtcggtgttaatgaacttgattagtacaagtagtagtagaacacagcaagctaagtttaattaccagctttagtaggaagagttgcaagagtgtgaaccagctaattaattactgtgggcgaggcgtagtaattaccaccaactccaaggattaatcaaatccggtttaaatccgaggagacaagtgcacgttagagccccggccaatgggggagcgccacgtagcgcatggctcgagccggaccaaaattagcgcgtcccgtggatgggccttgtcgggctcggtgcggcgcggccacctttttttttttgccaccctgagccactgtacggtggggcccacgcggtggggagttaatcgttattcgctggccagcctcgtgcatggctggcacgtgggcccactctcctcaaaaggaataattgatgcagtaaaaaatttactaggagtagtacgtaggtttttttactagtttgagggtggtggatttactgtgggggttggatgggtgtagatttgttgcgaaatttggctggaaatgggaatccgaggtgaaatttattggatttttgccgtgtagagggcaggcagcatgcatggcttgcatgtgaatccaaagctagcaaaacatcattcaaagcctcactgctgcagttttaggttggggcagaaaaaacggtagcaataaagaaggtaatcttttttgcactgtatatagagagagagaataaaaagggagctgctttttttaggtgaaaagactcgaaaagagtggtgagtttaggttgttctagatgatggtggtgttcctgcactgcagtgctctttgtgtggatttatttttagctaagggaatgattgggaaattttgctgtgtttttttgtgtagtggtaaagagaaaaggactagcatatcataaagtgagagagagaaaaaaataaagcttagtgcaggatggattatgtgtgtagctaggggggagagggggtcaggcttgcactaagaaagcaatgaataaaatgggaggggtacattttagtactacgaaatcacagttgcggtgcacttagataataatcacagtatattaaggtcgacaaaagtacacatcttgatatacaaaactagttacagaaagatggaaaattttttactctagtgaattattgttagcactcatgagaaacacttgcactagtttaggaggagaaggttccaaatcctttcttctttttggaaccaatacaactagaacaatctttttctcccattgatagacagatagagaaagtggcaaaaaaagaagaaaaaaaaaacagagagcaacgaatctaggggagcaccaccactagcgtgggccccacggtggctggctggcgctttcaaggcctagggggtggtaggtggggcccactgacagccgcatgtcggtgcccccgctgcgcagcgaggccgtgagcgccgcgccagctcacgcgtcatttgactgccagctgtctcccccctccccgtcacatgattggctcctcccccctacctttaattttatttttcttttttcttttttgacatccataattaagaattttcaaatggtaaaataaatataatagcgctagtttgaacttgaatataaatataaaagtggcaacaattttctcctcctctcccatgcagtaatcgagctgtgcctaacatggtccatgttcccccaattattgcgcctcctccatcgtgcccgtgcatgcactaccccccaatcattattactcgtcttcattagccacacattacctgtccaaccaggcacaagcaaaatataattaactactaattaattactacttgctaattaacagcaagtgatgtggttaatgtaataactggatggtaattggatgctgcagggtgctgatctttgtgaggctgatcgcgttcacactgttcgtgatatggcgtatcgagcacaagaacccggacgcgatgtggctgtgggtgacgtcgatcgccggcgagttctggttcgggttctcgtggctgctcgaccagctccccaagctgaacccgatcaaccgcgtccccgacctcgccgtcctccgccgccgcttcgaccacgccgacgggacctcctccctcccggggctggacatcttcgtcaccaccgccgacccgatcaaggagcccatcctgtcgacggcgaactccatcctctccatcctcgccgccgactaccccgtcgaccgcaacacctgctacctctccgacgactctgggatgctcctcacctacgaggccatggcggaggcggccaagttcgcgacgctgtgggtgcccttctgccggaagcacgccatcgagccgcgcgggcctgagagctacttcgagctcaagtcccacccctacatggggagggcgcaggaggagttcgtcaacgaccgccgccgcgtccgcaaggagtacgacgacttcaaggccaggatcaacggcctcgagcacgacatcaagcagaggtccgactcctacaacgccgccgccggcgtcaaggacggcgagccccgcgccacctggatggccgacgggtcgcagtgggagggcacctggatcgagcagtcggagaaccaccgcaagggcgaccacgccggcatcgtcctggtcagtataattaaaagttaattaattattactcttatagtacaaatcttttgtttatgtgattatttggttagttagtgatgacttgtcagggcgaatattattttggattgggagatatgtgtgggattttgatggaattgacgtggtgatagtcaagagcgcaaccaccacgcactaattgcacattagtagtcgtagcagcatgcaggataatgactcacttgtgtctgaacaagctagtggttggggtggtcctttccacccagacagcaccaccacatcaccattaatccacacccccctaattaatctcacctcctctcaccattaactaaccaccatttcttaattactgctacaagtacaagttaattaattaattaccacaatataattaaccatcaagtttaattgcagtgattactaattaattatttattactcctagtagtggtaaatataggagtagtaattagtactagatgacttttttttactgatatggtaaatgatggtaaaaatgtgcaggtgttgctgaaccacccgagccacgcacggcagctggggccgccggcgagcgccgacaacccgctggacttcagcggcgtggacgtgcggctgccgatgctggtgtacgtcgcacgtgagaagcgccccgggtgcaaccaccagaagaaggccggcgccatgaacgcgctgacccgcgcctccgccgtgctctccaactcccccttcatcctcaacctcgactgcgaccactacatcaacaactcccaggcgctccgcgccggcatctgcttcatgctcggccgcgacagcgacaccgtcgcgttcgtccagttcccgcagcgcttcgagggcgtcgaccccaccgacctctatgctaaccacaaccgtatcttcttcgacggcacgctccgtgccctcgacgggctgcaggggcctatctacgtcggcaccgggtgtctcttccgccgcatcacgctgtacgggttcgagccgccgaggatcaacgtcggcggaccgtgcttcccgaggctcggtgggatgttcgccaagaacaggtaccagaagcctgggttcgagatgaccaagcctggtgccaagccggtggcgccgccgccggcggcgacggtggcgaaggggaagcacgggttcctgccgatgcccaagaaggcgtacggcaagtcggacgcgttcgccgacaccatcccgcgcgcgtcgcacccgtcgccgtacgcggcggaggcggcggtggcggccgacgaggcggcgatcgcggaggccgtgatggtgacggcggcggcgtacgagaagaagaccgggtgggggagcgacatcgggtgggtgtacggcacggtgacggaggacgtggtgaccggctaccggatgcacatcaaggggtggaggtcgcgctactgctccatctacccgcacgcgttcatcgggacggcgccgatcaacctgacggagaggctgttccaggtgctccggtggtcgacgggttcgctggagatcttcttctcgaggaacaacccgctgttcgggagcacgttcctgcacccgctgcagcgcgtggcgtacatcaacatcaccacctacccgttcacggcgctgttcctcatcttctacaccaccgtgccggcgctgtcgttcgtgacggggcacttcatcgtgcagaggccgaccaccatgttctacgtctacctcgccatcgtgctcgggacgctgctcatcctcgccgtgctggaggtgaagtgggcgggggtcaccgtgttcgagtggttcaggaacgggcagttctggatgacggccagctgctccgcctacctcgccgccgtgctgcaggtggtcaccaaggtggtgttccggcgggacatctcgttcaagctcacctccaagctccccgccggcgacgagaagaaggacccctacgccgacctgtacgtggtgcggtggacgtggctcatgatcacccccatcatcatcatcctcgtcaacatcatcggctccgccgtcgccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtgttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaagcacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgccgtgctctacatcaacatcccccacatccatggccccggccgccacggcgccgcctcaccatcccacggccaccacagcgcccatggcaccaagaagtacgacttcacctacgcctggccatgaggacgccgtcgccggagacgaagaagaaaacacaaacaagaacaagacgacaccaacaacaccaacaacaacaaacacgagatgagtacgttctactacacgctgctgcaacaacacatactactgaacactgtgcatgcatttgatcgagcgacccgccaaaatttgaaagttttttttcttcttttcttttaacctttttttttcctctttttgccccctcctctctctccttttctttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattacctgtggtaattaattatgtattatacattactgcaaggaagagaggggggcttacaggtggggcccggggggtggggtgtggtgtatgattgtactgtacatgctgggagatgtatgtatacggagacaaaaagacaagagtcacagagagtgagagaaagagaggctggaagtgggcccggccaggtggtggtggtattcttttagtacatggaaacaataaatttaatttcattatt</dnaseqindica>|
| + | * Biomass Science and Conversion Technologies Department, Sandia National Laboratories, Livermore, California 94551; |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067583.1 RefSeq:Os08g0160500]|
| + | * Department of Plant Molecular System Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446–701, Korea |
| − | }}
| + | |
| − | [[Category:Genes]] | + | ==References== |
| − | [[Category:Japonica mRNA]]
| + | <references> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica Genes]]
| + | Vega-Sánchez ME, Verhertbruggen Y, Christensen U, Chen X, Sharma V, Varanasi |
| − | [[Category:Japonica Chromosome 8]] | + | P, Jobling SA, Talbot M, White RG, Joo M, Singh S, Auer M, Scheller HV, Ronald |
| − | [[Category:Chromosome 8]]
| + | PC. Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan |
| | + | deposition, cell wall mechanical properties, and defense responses in vegetative |
| | + | tissues of rice. Plant Physiol. 2012 May;159(1):56-69. doi: |
| | + | 10.1104/pp.112.195495. Epub 2012 Mar 2. PubMed PMID: 22388489; PubMed Central |
| | + | PMCID: PMC3375985. |
| | + | </ref> |
| | + | |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
