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| − | {{JaponicaGene|
| + | The rice gene Os06g0625400 was reported as '''''spp''''' in 2010<ref name="ref1" /> by researchers from China. |
| − | GeneName = Os06g0625400|
| |
| − | Description = Similar to Metalloendopeptidase|
| |
| − | Version = NM_001064647.1 GI:115469025 GeneID:4341569|
| |
| − | Length = 10260 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0625400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os06g0625400 <=> spp, Osspp |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| + | * '''''SPP''''' encodes a metalloendopeptidase that cleaves a broad range of precursor substrates. |
| − | AP = Chromosome 6:26077334..26087593|
| + | * '''''SPP''''' is essential for chloroplast biogenesis at the early growth stage and for rice root development |
| − | CDS = 26077923..26078005,26078202..26078352,26079096..26079197,26079377..26079457,26079555..26079675<br>,26079939..26080056,26080169..26080292,26080466..26080618,26080772..26080999<br>,26081110..26081247,26081622..26081771,26081895..26082065,26082198..26082401<br>,26082535..26082759,26083116..26083250,26083650..26083751,26084241..26084481<br>,26086331..26086344|
| + | ===Mutation=== |
| − | GCID = <gbrowseImage1>
| + | * '''''spp''''' mutant shows leaf chlorosis at the early seedling stage but inhibition of root growth during the whole growth period. |
| − | name=NC_008399:26077334..26087593
| + | * The expression of some genes associated with chloroplast development was decreased in young seedlings of the spp mutant, but not in 14-day-old seedlings. Western blot analysis revealed that the Rubisco small subunit is not precisely processed in the spp mutant in 7-day-old seedlings, but the processing activity in the spp mutant is restored in 14-day-old seedlings. |
| − | source=RiceChromosome06
| + | * Moreover, the expression levels of Cab1R and Cab2R for the light-harvesting chlorophyll a / b -binding protein (LHCP) were highly up-regulated in the transgenic plants with overexpression of SPP. |
| − | preset=GeneLocation
| + | ===Expression === |
| − | </gbrowseImage1>|
| + | * Semi-quantitative RT–PCR analysis was performed to investigate the expression pattern of SPP in different tissues. The results showed that SPP was expressed in all the tested tissues, with a similar level in the spp mutant and the WT, and with higher expression levels in chloroplast-containing green tissues. SPP mRNAs also accumulated in roots. No signifi cant change in transcript levels was observed in the WT and the spp mutant shoots of 7- and 14-day-old plants. Furthermore, no differences in SPP mRNAs were observed when the WT and spp mutant plants were grown under light and dark conditions. |
| − | GSID = <gbrowseImage2>
| + | ===Sublocalization=== |
| − | name=NC_008399:26077334..26087593
| + | * Subcellular localization analysis indicates that SPP is targeted to the chloroplast. |
| − | source=RiceChromosome06
| + | |
| − | preset=GeneLocation
| + | ===Evolution=== |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>accacatgttgcaatccatttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaagcctaactggtgaaagatcacctgctgcggataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataagtggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattgatccagagtttctcaatcaacatgttctgtaagatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatcaatacaagatataagagctcaaatcctccttttacatccgtcgagctggatcatagtgactctggaagggaaggttgcactgtcactactcttacagtaacagctgaaccccagaattggaggagtgccatcaaagttgccgttcatgaggttaggagactcaaagagtttggtgtcacaatgggggaaatgacccgctacatggatgcactgataaaagatagcgagcaactggctatgatgattgatagtgttccctcagttgacaacttggacttcattatggagagtgatgcacttcgccatactgttatggatcaattgcaggggcatgaaagtttgcttgctgttgctgaaaccgtcacccttgaggaggtcaacactgttggtgcagaagttctggaatttatttcagattatggaaagcctgatgcaccgcttcctgctgctattgtggcctgtgtacccaaaaaggtccacatggatggagtaggtgaaactgattttgagatacatccggaagaaataactgattccatcaaggcgggtcttgaggaacctatttacccagagcctgagctcgaggtgccaaaagaactgattactcggtctgagcttgaggacttgaaattgcaacgcaaaccatcatttgcttctctgagtaaagaggagaatgttgtgaaaatatttgacgatgaaactggtatagcacagcgccgcctttctaatggaatttccatcaattataagatcacacaaaatgaggcaagggttggtgttatgcgactgatagtaggtggtgggagggcaacagaagattctgaatctaagggatctgttattgttggtgttcgtactttgagtgaaggtggctgtgttggcaacttttcaagggaacaggttgaacttttctgtgtgaataatctcataaactgctcattagaatccaatgaggagttcatttttatggagttcagatttgctttaagagacaatggcatgcgcgctgctttccaactcctccatatggtccttgagcataatgtgtggctagaagatgcatttgatagagcaactcagctatacctgtcttactatcgctccattcccaaaagtttggagcgctctacagcccacaagcttatgttagccatgttgaaccatgatgaaaggtttgtagagccatcaccacattcattgcagaaattgactctccaatcagtcaaagatgctgttatgaaccagtttgttggtgacaacatggaggtcagtattgttggtgatttcactgaagaagaggtcgaatcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacaggagcatattgagaagatttccttcctgccgtttccttcggacttgcattttcagcaagtatacataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaatcgctgggggtttgcaactgaagggaatgatctattcaatgtcatccggagttctagtggagatgctcaagtttctgaatcagcaaacacagatcttacggagaggaaacataatgacgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattattaattctaggctattcacaacagttcgagattccatgggattaacctacgatgtttcttttgaactaaacctttttgacaaattggaccttggttggtatgtgattgcagtaacatcaaccccgagcaaggttcataaagctgttgatgcatgcaaaggtgttctcagaggattacatagtaacaaaattgttgaaagggagctggaccgggcaaagaggacgttattgatgaaacatgaggctgagacaaagacaaatgcctattggcttggtttactagcccatctgcagtcttcatctgtgcctagaaaggaaatatcctgcatcaaggaattgacgatgttgtatgaaagtgccacgattgaggacttgtatcttgcatatgagcacctaaaagttgatgaatcttctttgtttgcttgcattgggattgctggtgctgaatctggcgaagagacgactgatgatgagctcgatatgggcctgcatggcatgggtcctattggaggccgtggtctatcaacaatgaccagaccaaccacatga</cdnaseq>|
| + | You can also add sub-section(s) at will. |
| − | AA = <aaseq>TTCCNPFGAMASLFAPKLPGGLAASLTGERSPAADKIKPVKRER QAIRPPVEHKWSLPGVAQDAKPPAIFQHELIQSFSINMFCKIPVNQVQTYKDLRSVLM KRIFLSALHFRINTRYKSSNPPFTSVELDHSDSGREGCTVTTLTVTAEPQNWRSAIKV AVHEVRRLKEFGVTMGEMTRYMDALIKDSEQLAMMIDSVPSVDNLDFIMESDALRHTV MDQLQGHESLLAVAETVTLEEVNTVGAEVLEFISDYGKPDAPLPAAIVACVPKKVHMD GVGETDFEIHPEEITDSIKAGLEEPIYPEPELEVPKELITRSELEDLKLQRKPSFASL SKEENVVKIFDDETGIAQRRLSNGISINYKITQNEARVGVMRLIVGGGRATEDSESKG SVIVGVRTLSEGGCVGNFSREQVELFCVNNLINCSLESNEEFIFMEFRFALRDNGMRA AFQLLHMVLEHNVWLEDAFDRATQLYLSYYRSIPKSLERSTAHKLMLAMLNHDERFVE PSPHSLQKLTLQSVKDAVMNQFVGDNMEVSIVGDFTEEEVESCVLDYLGTVSAPKSSK TQEHIEKISFLPFPSDLHFQQVYIKDTDERACAYIAGPAPNRWGFATEGNDLFNVIRS SSGDAQVSESANTDLTERKHNDVRSHSLFFGITLSLLAEIINSRLFTTVRDSMGLTYD VSFELNLFDKLDLGWYVIAVTSTPSKVHKAVDACKGVLRGLHSNKIVERELDRAKRTL LMKHEAETKTNAYWLGLLAHLQSSSVPRKEISCIKELTMLYESATIEDLYLAYEHLKV DESSLFACIGIAGAESGEETTDDELDMGLHGMGPIGGRGLSTMTRPTT</aaseq>|
| + | ==Labs working on this gene== |
| − | DNA = <dnaseqindica>9589..9671#9242..9392#8397..8498#8137..8217#7919..8039#7538..7655#7302..7425#6976..7128#6595..6822#6347..6484#5823..5972#5529..5699#5193..5396#4835..5059#4344..4478#3843..3944#3113..3353#1250..1263#atctcttcttcctcccttcccctcgggccaagggccatctcacccccaccaccgcgatggcctccttcccctcccctccgctcgccgcggcggcggccgcagcgccgccccgcctcgccccgggcctccccctggccgccgccgccgtgcgcaggccctcctccctcgcgcgccggtcctccatcgccctcgccgccccggccaaccccctccgctgcatccaccgccgcgccgtgtcgcccaggtgagcccgaagaggagtttggttacctctgtcccgcccccgcccccactcgtctagggttccagcggaattggccgcccgcgagactctgattttcagcgtggattgttgtgtgttgccctgcaggttgaggaggcggacggaagctgtcggcgcggcctcggcggcgattgggagcctcggcgaggagagggaagggtgcctctcgtgcttccccaggggccggaggcgggggaggccggggctcgcgaggttcgcgccgtgcgcgctcccgcacacctatgggctatcgtcgctccacagcgggttgactggcgctaaggttcgtgtcatccgtaatgcgtctgaattgatagattaggaaaatccggttcagttaattggggatcattggatgagtgttgtggacaaaagtggccagttcccttgcttgcgatgctgtgtcctcctcggttgctttttaatggtgcgtgtggtttattgggaataggatcggtacaacaaatgtggatatcgctatcagtaaagcattgagtgcgcctgtatgtatttctccgacttatacagaaatcttaaacatgggataggtccgcatgttttaatttacagcacaaatggcaagctaattgttgaattaacatcaaagttgaagctagaaagaagtactgtactgcaaatcatcgcttaaagcaccattcttcagggctggttctcaacggcatgtgaacagtgaacacactcgagaattaggaacacgtcttttcatatgtttgttttgatgcatttacttgtatttattcaaagaatccagcttcaattatgttataaaacaggaaataataaattaataaaggttatatggcactacagagtataacatgatcccatagttccccttcttgattaaagtggttcaatggaataaaattcatgaattctgaccacgatgtttgatgattttcagatcaggcgtcgccatgtattacatgctgctggacctgatgaaccacatgttgcaagtccaacttggtctgaaactgctctggataaacattatgtagatcagccaattgggaaggaggaacttgaaggttttcttaacacaccgcttccttctcatccaaagctagtccgaggacaattgaagaatggcctccgatatcttattctaccaaacaaagttccagcaaacaggtgaagaaacttgtttcatttccacctataaacccttcttttgcagcagtaccaacataaccttcagctgctataacaaaagtatttacatgatttgggatgccgtgagttgtatttcctagcagtgtgggggcctacagttttgacttttgacaagttgttatgttaatttcgttgcaacataactatttggattttggaccctttaaacattcaatatactttagtgttgattcctggacatcaaaattgtttcagtatattgatatattgacaaatattatacggtggcttggggcctagttcatgccagtaaattacactacaaacttgtgctaaatgtagagcatatacacaatgttctaatatgcttgtcaaccggtgattaggtgcaatgctgatgcaagattctaactaatcttttttgcaggtttgaggctcacatggaagttcatgttggatcaattgatgaggaagaagatgagcagggaattgcacatatgattgagcatgttgcatttcttggcagtaaaaagcgtgaaaaacttttggggacaggtgcaaggtctaatgcatatacagatttccaccataccgtgttccatatacattctccaactaaaacaaaggtatgtacttttgcagtcatcggttgtttctttaagtctatctctgttttctattgctttgaatattttctttgacaagaatatatatgaaaatcaactgggaaactgttgactgccatattatgtgcataacatgtcttcaacgcttaacatatgtaggtatttcaatctggtggtccaaatttgatgtcttctcttgtttatttaagggtttaacatattagcttgtcttttatgtggcaggaatatggtgaagacttgctcccttctgtgttggatgcattgaatgaggtgggatgttacgtataggctatatgcgcagcttttgctaccattttatttctttttggttaagggcctttcaaataacaattatctttcatttggcgataaaagttttacatgcatttgggtagcctgtttaacaaattctctttctgccaaatttttgttctcccagatagcttttcatccaaaattttcttcttctcgtgttgagaaagagagaagagcaattctttcagagctccagatgatgaacacaatcgagtatcgtgttgattgtcaggcaagtaattattttactctgtaccactttttagggcatcctctgagaagggattgttcctcttgggacacatgctaaatcaattcatatttaagggtactatctttctatactaattgcaattcatttggtgtagttattgcaacatttgcactcagaaaacaaactgagcgaaagattccctattggacttgaagagcagatacataaatgggatcctgataagatccgcagatttcatgagcgttggtattaccctgctaatgctactttatatctggtaggagagatcgatgatattcccagagcaatacgagaaatagaggtaactagaattacaacctcctaactgttgttttttcttatatttctgctgatctgttttttggattaatcgtaaactgactcatatgcaatgcaggctgtgtttgaacatacacttccagaaggtgaagcagcccctatgtcaactgcaagtccatttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaagcctaactggtgaaagatcacctgctgcggataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataagtggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattgatccagagtttctcaatcaacatgttctgtaaggtatgattgtttgctatctgctgaattttactctttagggcttgttctgttaatcctcatgaggaaggggttgagagggattaattccacacctcaatagatgtggaataaatccccctcaatccctttgggggagggattaactgaacaatgcatttgggttgcgctttgtgcctctacagcttagtgttagcttagtttaacaccagatgtttccatagtggtttctgttataatatatagtagatgggaaccagtattttgttgtaatcagcgaaaagtttgatagccctttcttccctccctctctgtgcacatgcacacatattccgcctgtgcctaactattcattttctcttctcagatatgattctattttatgattcaaatgagaacagtctttagctttaagcttactcttctctttgaactttcttaaaaatgcatcatttgtatatgcctaactaattgatttctttttgtggacagatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatcaatacaagatataaggttcgtgatatttaatcaacgtgaattttgaatcactctaattttttcacttatgctgagactttctttggtttatctctctaaagaatgcagataagttcatatgatttgcattcttttatatctatatctagcacatgtttttttctttttgtagattgtttgtacatgtttaacagatagacataagacatgcattttactggacattagacttgctgcataagtctgtaggaggcctgaggtctttccagtgaagtatttacatttgtttggaatcatctcttttttttttgcttggaattaggtttaagtaattaatagttccatgtttcttgtttctagtttttagtgataaaaacatctttcctgtatatgaatgctgtattttttatacagagctcaaatcctccttttacatccgtcgagctggatcatagtgactctggaagggaaggttgcactgtcactactcttacagtaacagctgaaccccagaattggaggagtgccatcaaagttgccgttcatgaggtttgtatagtatactcatgaccagtttatctgttttacatgacttgttctagctcacactcaatttaatcaatggaattatatatagacagtcatagataatttcaggaaatgtaattgttggaaggaacaaatagaaaaaagaaacagttcaatggaagttattgaagcaagattttattagcacaagacccgcataaagcaaaacttgcctatgtcctgtgtaacgctgctagccaaagcctaatctgacctgatcttcatccaacctggtcccaacacaacccaagcattctttaaagggaagctc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tgcatttgcagggatcgagctagctcctcaagctaggagttgtatgatcctgttcgagacaaatgttgacagttgtgcgttggcacatactgttttagactcctcgtgcgttgagatcggatcaaatcgctatttcttgtgcattgcaaccgaaggcttggctgccacaattctttttgtgatattgcgttgattgatggcgaggtcctgaaaggtcaggcagcttcacatgtatagtaaagaactaaaaaggttcatcgttgttgtaactaggatacatcaggtcattgaaaaggtaggggccagtagaatctcagataaattgctgtgcgacggctatagcgtaggggtcttataacgcaataatgcaagcccacaagttgtaacattctagtattatttttctcgaaaatgtatatttgagctatttatatttattaggtttcacaattttgtgatgattctactatcc</dnaseqindica>|
| + | * State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, PR China |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064647.1 RefSeq:Os06g0625400]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Yue R, Wang X, Chen J, Ma X, Zhang H, Mao C, Wu P. A rice stromal processing |
| − | [[Category:Oryza Sativa Japonica Group]] | + | peptidase regulates chloroplast and root development. Plant Cell Physiol. 2010 |
| − | [[Category:Japonica Genes]]
| + | Mar;51(3):475-85. doi: 10.1093/pcp/pcq012. PubMed PMID: 20097911. |
| − | [[Category:Japonica Chromosome 6]] | + | |
| − | [[Category:Chromosome 6]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
