Difference between revisions of "Os06g0625400"

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Please input one-sentence summary here.
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The rice gene Os06g0625400 was reported as '''''spp''''' in 2010<ref name="ref1" /> by researchers from China.
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os06g0625400 <=> spp, Osspp
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===Function===
 
===Function===
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Please input function information here.
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* '''''SPP''''' encodes a metalloendopeptidase that cleaves a broad range of precursor substrates.
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* '''''SPP''''' is essential for chloroplast biogenesis at the early growth stage and for rice root development
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===Expression===
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===Mutation===
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Please input expression information here.
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* '''''spp''''' mutant shows leaf chlorosis at the early seedling stage but inhibition of root growth during the whole growth period.
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* The expression of some genes associated with chloroplast development was decreased in young seedlings of the spp mutant, but not in 14-day-old seedlings. Western blot analysis revealed that the Rubisco small subunit is not precisely processed in the spp mutant in 7-day-old seedlings, but the processing activity in the spp mutant is restored in 14-day-old seedlings.
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* Moreover, the expression levels of Cab1R and Cab2R for the light-harvesting chlorophyll a / b -binding protein (LHCP) were highly up-regulated in the transgenic plants with overexpression of SPP.
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===Expression ===
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* Semi-quantitative RT–PCR analysis was performed to investigate the expression pattern of SPP in different tissues. The results showed that SPP was expressed in all the tested tissues, with a similar level in the spp mutant and the WT, and with higher expression levels in chloroplast-containing green tissues. SPP mRNAs also accumulated in roots. No signifi cant change in transcript levels was observed in the WT and the spp mutant shoots of 7- and 14-day-old plants. Furthermore, no differences in SPP mRNAs were observed when the WT and spp mutant plants were grown under light and dark conditions.
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===Sublocalization===
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* Subcellular localization analysis indicates that SPP is targeted to the chloroplast.
  
 
===Evolution===
 
===Evolution===
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You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
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==Labs working on this gene==
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, PR China
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==References==
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<references>
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* <ref name="ref1">
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Yue R, Wang X, Chen J, Ma X, Zhang H, Mao C, Wu P. A rice stromal processing
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peptidase regulates chloroplast and root development. Plant Cell Physiol. 2010
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Mar;51(3):475-85. doi: 10.1093/pcp/pcq012. PubMed PMID: 20097911.
  
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==Labs working on this gene==
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</ref>
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Please input related labs here.
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</references>
  
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==References==
 
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==Structured Information==
 
==Structured Information==
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{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
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GeneName = Os06g0625400|
 
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Description = Similar to Metalloendopeptidase|
 
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Version = NM_001064647.1 GI:115469025 GeneID:4341569|
 
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Length = 10260 bp|
 
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Definition = Oryza sativa Japonica Group Os06g0625400, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
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  ORGANISM  Oryza sativa Japonica Group
 
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.
 
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|
 
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Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
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AP = Chromosome 6:26077334..26087593|
 
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CDS = 26077923..26078005,26078202..26078352,26079096..26079197,26079377..26079457,26079555..26079675<br>,26079939..26080056,26080169..26080292,26080466..26080618,26080772..26080999<br>,26081110..26081247,26081622..26081771,26081895..26082065,26082198..26082401<br>,26082535..26082759,26083116..26083250,26083650..26083751,26084241..26084481<br>,26086331..26086344|
 
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GCID = <gbrowseImage1>
 
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name=NC_008399:26077334..26087593
 
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source=RiceChromosome06
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008399:26077334..26087593
 
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source=RiceChromosome06
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
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CDNA = <cdnaseq>accacatgttgcaatccatttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaagcctaactggtgaaagatcacctgctgcggataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataagtggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattgatccagagtttctcaatcaacatgttctgtaagatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatcaatacaagatataagagctcaaatcctccttttacatccgtcgagctggatcatagtgactctggaagggaaggttgcactgtcactactcttacagtaacagctgaaccccagaattggaggagtgccatcaaagttgccgttcatgaggttaggagactcaaagagtttggtgtcacaatgggggaaatgacccgctacatggatgcactgataaaagatagcgagcaactggctatgatgattgatagtgttccctcagttgacaacttggacttcattatggagagtgatgcacttcgccatactgttatggatcaattgcaggggcatgaaagtttgcttgctgttgctgaaaccgtcacccttgaggaggtcaacactgttggtgcagaagttctggaatttatttcagattatggaaagcctgatgcaccgcttcctgctgctattgtggcctgtgtacccaaaaaggtccacatggatggagtaggtgaaactgattttgagatacatccggaagaaataactgattccatcaaggcgggtcttgaggaacctatttacccagagcctgagctcgaggtgccaaaagaactgattactcggtctgagcttgaggacttgaaattgcaacgcaaaccatcatttgcttctctgagtaaagaggagaatgttgtgaaaatatttgacgatgaaactggtatagcacagcgccgcctttctaatggaatttccatcaattataagatcacacaaaatgaggcaagggttggtgttatgcgactgatagtaggtggtgggagggcaacagaagattctgaatctaagggatctgttattgttggtgttcgtactttgagtgaaggtggctgtgttggcaacttttcaagggaacaggttgaacttttctgtgtgaataatctcataaactgctcattagaatccaatgaggagttcatttttatggagttcagatttgctttaagagacaatggcatgcgcgctgctttccaactcctccatatggtccttgagcataatgtgtggctagaagatgcatttgatagagcaactcagctatacctgtcttactatcgctccattcccaaaagtttggagcgctctacagcccacaagcttatgttagccatgttgaaccatgatgaaaggtttgtagagccatcaccacattcattgcagaaattgactctccaatcagtcaaagatgctgttatgaaccagtttgttggtgacaacatggaggtcagtattgttggtgatttcactgaagaagaggtcgaatcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacaggagcatattgagaagatttccttcctgccgtttccttcggacttgcattttcagcaagtatacataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaatcgctgggggtttgcaactgaagggaatgatctattcaatgtcatccggagttctagtggagatgctcaagtttctgaatcagcaaacacagatcttacggagaggaaacataatgacgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattattaattctaggctattcacaacagttcgagattccatgggattaacctacgatgtttcttttgaactaaacctttttgacaaattggaccttggttggtatgtgattgcagtaacatcaaccccgagcaaggttcataaagctgttgatgcatgcaaaggtgttctcagaggattacatagtaacaaaattgttgaaagggagctggaccgggcaaagaggacgttattgatgaaacatgaggctgagacaaagacaaatgcctattggcttggtttactagcccatctgcagtcttcatctgtgcctagaaaggaaatatcctgcatcaaggaattgacgatgttgtatgaaagtgccacgattgaggacttgtatcttgcatatgagcacctaaaagttgatgaatcttctttgtttgcttgcattgggattgctggtgctgaatctggcgaagagacgactgatgatgagctcgatatgggcctgcatggcatgggtcctattggaggccgtggtctatcaacaatgaccagaccaaccacatga</cdnaseq>|
 
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AA = <aaseq>TTCCNPFGAMASLFAPKLPGGLAASLTGERSPAADKIKPVKRER                    QAIRPPVEHKWSLPGVAQDAKPPAIFQHELIQSFSINMFCKIPVNQVQTYKDLRSVLM                    KRIFLSALHFRINTRYKSSNPPFTSVELDHSDSGREGCTVTTLTVTAEPQNWRSAIKV                    AVHEVRRLKEFGVTMGEMTRYMDALIKDSEQLAMMIDSVPSVDNLDFIMESDALRHTV                    MDQLQGHESLLAVAETVTLEEVNTVGAEVLEFISDYGKPDAPLPAAIVACVPKKVHMD                    GVGETDFEIHPEEITDSIKAGLEEPIYPEPELEVPKELITRSELEDLKLQRKPSFASL                    SKEENVVKIFDDETGIAQRRLSNGISINYKITQNEARVGVMRLIVGGGRATEDSESKG                    SVIVGVRTLSEGGCVGNFSREQVELFCVNNLINCSLESNEEFIFMEFRFALRDNGMRA                    AFQLLHMVLEHNVWLEDAFDRATQLYLSYYRSIPKSLERSTAHKLMLAMLNHDERFVE                    PSPHSLQKLTLQSVKDAVMNQFVGDNMEVSIVGDFTEEEVESCVLDYLGTVSAPKSSK                    TQEHIEKISFLPFPSDLHFQQVYIKDTDERACAYIAGPAPNRWGFATEGNDLFNVIRS                    SSGDAQVSESANTDLTERKHNDVRSHSLFFGITLSLLAEIINSRLFTTVRDSMGLTYD                    VSFELNLFDKLDLGWYVIAVTSTPSKVHKAVDACKGVLRGLHSNKIVERELDRAKRTL                    LMKHEAETKTNAYWLGLLAHLQSSSVPRKEISCIKELTMLYESATIEDLYLAYEHLKV                    DESSLFACIGIAGAESGEETTDDELDMGLHGMGPIGGRGLSTMTRPTT</aaseq>|
 
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DNA = <dnaseqindica>9589..9671#9242..9392#8397..8498#8137..8217#7919..8039#7538..7655#7302..7425#6976..7128#6595..6822#6347..6484#5823..5972#5529..5699#5193..5396#4835..5059#4344..4478#3843..3944#3113..3353#1250..1263#atctcttcttcctcccttcccctcgggccaagggccatctcacccccaccaccgcgatggcctccttcccctcccctccgctcgccgcggcggcggccgcagcgccgccccgcctcgccccgggcctccccctggccgccgccgccgtgcgcaggccctcctccctcgcgcgccggtcctccatcgccctcgccgccccggccaaccccctccgctgcatccaccgccgcgccgtgtcgcccaggtgagcccgaagaggagtttggttacctctgtcccgcccccgcccccactcgtctagggttccagcggaattggccgcccgcgagactctgattttcagcgtggattgttgtgtgttgccctgcaggttgaggaggcggacggaagctgtcggcgcggcctcggcggcgattgggagcctcggcgaggagagggaagggtgcctctcgtgcttccccaggggccggaggcgggggaggccggggctcgcgaggttcgcgccgtgcgcgctcccgcacacctatgggctatcgtcgctccacagcgggttgactggcgctaaggttcgtgtcatccgtaatgcgtctgaattgatagattaggaaaatccggttcagttaattggggatcattggatgagtgttgtggacaaaagtggccagttcccttgcttgcgatgctgtgtcctcctcggttgctttttaatggtgcgtgtggtttattgggaataggatcggtacaacaaatgtggatatcgctatcagtaaagcattgagtgcgcctgtatgtatttctccgacttatacagaaatcttaaacatgggataggtccgcatgttttaatttacagcacaaatggcaagctaattgttgaattaacatcaaagttgaagctagaaagaagtactgtactgcaaatcatcgcttaaagcaccattcttcagggctggttctcaacggcatgtgaacagtgaacacactcgagaattaggaacacgtcttttcatatgtttgttttgatgcatttacttgtatttattcaaagaatccagcttcaattatgttataaaacaggaaataataaattaataaaggttatatggcactacagagtataacatgatcccatagttccccttcttgattaaagtggttcaatggaataaaattcatgaattctgaccacgatgtttgatgattttcagatcaggcgtcgccatgtattacatgctgctggacctgatgaaccacatgttgcaagtccaacttggtctgaaactgctctggataaacattatgtagatcagccaattgggaaggaggaacttgaaggttttcttaacacaccgcttccttctcatccaaagctagtccgaggacaattgaagaatggcctccgatatcttattctaccaaacaaagttccagcaaacaggtgaagaaacttgtttcatttccacctataaacccttcttttgcagcagtaccaacataaccttcagctgctataacaaaagtatttacatgatttgggatgccgtgagttgtatttcctagcagtgtgggggcctacagttttgacttttgacaagttgttatgttaatttcgttgcaacataactatttggattttggaccctttaaacattcaatatactttagtgttgattcctggacatcaaaattgtttcagtatattgatatattgacaaatattatacggtggcttggggcctagttcatgccagtaaattacactacaaacttgtgctaaatgtagagcatatacacaatgttctaatatgcttgtcaaccggtgattaggtgcaatgctgatgcaagattctaactaatcttttttgcaggtttgaggctcacatggaagttcatgttggatcaattgatgaggaagaagatgagcagggaattgcacatatgattgagcatgttgcatttcttggcagtaaaaagcgtgaaaaacttttggggacaggtgcaaggtctaatgcatatacagatttccaccataccgtgttccatatacattctccaactaaaacaaaggtatgtacttttgcagtcatcggttgtttctttaagtctatctctgttttctattgctttgaatattttctttgacaagaatatatatgaaaatcaactgggaaactgttgactgccatattatgtgcataacatgtcttcaacgcttaacatatgtaggtatttcaatctggtggtccaaatttgatgtcttctcttgtttatttaagggtttaacatattagcttgtcttttatgtggcaggaatatggtgaagacttgctcccttctgtgttggatgcattgaatgaggtgggatgttacgtataggctatatgcgcagcttttgctaccattttatttctttttggttaagggcctttcaaataacaattatctttcatttggcgataaaagttttacatgcatttgggtagcctgtttaacaaattctctttctgccaaatttttgttctcccagatagcttttcatccaaaattttcttcttctcgtgttgagaaagagagaagagcaattctttcagagctccagatgatgaacacaatcgagtatcgtgttgattgtcaggcaagtaattattttactctgtaccactttttagggcatcctctgagaagggattgttcctcttgggacacatgctaaatcaattcatatttaagggtactatctttctatactaattgcaattcatttggtgtagttattgcaacatttgcactcagaaaacaaactgagcgaaagattccctattggacttgaagagcagatacataaatgggatcctgataagatccgcagatttcatgagcgttggtattaccctgctaatgctactttatatctggtaggagagatcgatgatattcccagagcaatacgagaaatagaggtaactagaattacaacctcctaactgttgttttttcttatatttctgctgatctgttttttggattaatcgtaaactgactcatatgcaatgcaggctgtgtttgaacatacacttccagaaggtgaagcagcccctatgtcaactgcaagtccatttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaagcctaactggtgaaagatcacctgctgcggataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataagtggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattgatccagagtttctcaatcaacatgttctgtaaggtatgattgtttgctatctgctgaattttactctttagggcttgttctgttaatcctcatgaggaaggggttgagagggattaattccacacctcaatagatgtggaataaatccccctcaatccctttgggggagggattaactgaacaatgcatttgggttgcgctttgtgcctctacagcttagtgttagcttagtttaacaccagatgtttccatagtggtttctgttataatatatagtagatgggaaccagtattttgttgtaatcagcgaaaagtttgatagccctttcttccctccctctctgtgcacatgcacacatattccgcctgtgcctaactattcattttctcttctcagatatgattctattttatgattcaaatgagaacagtctttagctttaagcttactcttctctttgaactttcttaaaaatgcatcatttgtatatgcctaactaattgatttctttttgtggacagatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatcaatacaagatataaggttcgtgatatttaatcaacgtgaattttgaatcactctaattttttcacttatgctgagactttctttggtttatctctctaaagaatgcagataagttcatatgatttgcattcttttatatctatatctagcacatgtttttttctttttgtagattgtttgtacatgtttaacagatagacataagacatgcattttactggacattagacttgctgcataagtctgtaggaggcctgaggtctttccagtgaagtatttacatttgtttggaatcatctcttttttttttgcttggaattaggtttaagtaattaatagttccatgtttcttgtttctagtttttagtgataaaaacatctttcctgtatatgaatgctgtattttttatacagagctcaaatcctccttttacatccgtcgagctggatcatagtgactctggaagggaaggttgcactgtcactactcttacagtaacagctgaaccccagaattggaggagtgccatcaaagttgccgttcatgaggtttgtatagtatactcatgaccagtttatctgttttacatgacttgttctagctcacactcaatttaatcaatggaattatatatagacagtcatagataatttcaggaaatgtaattgttggaaggaacaaatagaaaaaagaaacagttcaatggaagttattgaagcaagattttattagcacaagacccgcataaagcaaaacttgcctatgtcctgtgtaacgctgctagccaaagcctaatctgacctgatcttcatccaacctggtcccaacacaacccaagcattctttaaagggaagctc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tgcatttgcagggatcgagctagctcctcaagctaggagttgtatgatcctgttcgagacaaatgttgacagttgtgcgttggcacatactgttttagactcctcgtgcgttgagatcggatcaaatcgctatttcttgtgcattgcaaccgaaggcttggctgccacaattctttttgtgatattgcgttgattgatggcgaggtcctgaaaggtcaggcagcttcacatgtatagtaaagaactaaaaaggttcatcgttgttgtaactaggatacatcaggtcattgaaaaggtaggggccagtagaatctcagataaattgctgtgcgacggctatagcgtaggggtcttataacgcaataatgcaagcccacaagttgtaacattctagtattatttttctcgaaaatgtatatttgagctatttatatttattaggtttcacaattttgtgatgattctactatcc</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064647.1 RefSeq:Os06g0625400]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 6]]
 
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[[Category:Chromosome 6]]
 

Latest revision as of 12:16, 10 December 2016

The rice gene Os06g0625400 was reported as spp in 2010[1] by researchers from China.

Annotated Information

Gene Symbol

  • Os06g0625400 <=> spp, Osspp

Function

  • SPP encodes a metalloendopeptidase that cleaves a broad range of precursor substrates.
  • SPP is essential for chloroplast biogenesis at the early growth stage and for rice root development

Mutation

  • spp mutant shows leaf chlorosis at the early seedling stage but inhibition of root growth during the whole growth period.
  • The expression of some genes associated with chloroplast development was decreased in young seedlings of the spp mutant, but not in 14-day-old seedlings. Western blot analysis revealed that the Rubisco small subunit is not precisely processed in the spp mutant in 7-day-old seedlings, but the processing activity in the spp mutant is restored in 14-day-old seedlings.
  • Moreover, the expression levels of Cab1R and Cab2R for the light-harvesting chlorophyll a / b -binding protein (LHCP) were highly up-regulated in the transgenic plants with overexpression of SPP.

Expression

  • Semi-quantitative RT–PCR analysis was performed to investigate the expression pattern of SPP in different tissues. The results showed that SPP was expressed in all the tested tissues, with a similar level in the spp mutant and the WT, and with higher expression levels in chloroplast-containing green tissues. SPP mRNAs also accumulated in roots. No signifi cant change in transcript levels was observed in the WT and the spp mutant shoots of 7- and 14-day-old plants. Furthermore, no differences in SPP mRNAs were observed when the WT and spp mutant plants were grown under light and dark conditions.

Sublocalization

  • Subcellular localization analysis indicates that SPP is targeted to the chloroplast.

Evolution

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Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, PR China

References

  1. ↑ Yue R, Wang X, Chen J, Ma X, Zhang H, Mao C, Wu P. A rice stromal processing peptidase regulates chloroplast and root development. Plant Cell Physiol. 2010 Mar;51(3):475-85. doi: 10.1093/pcp/pcq012. PubMed PMID: 20097911.


Structured Information