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| − | {{JaponicaGene|
| + | The rice '''''Os02g0215200''''' was reported as '''''OsHDAC2''''' in 2002 <ref name="ref1" /> by researchers from Korea. |
| − | GeneName = Os02g0215200|
| |
| − | Description = Similar to Histone deacetylase (Fragment)|
| |
| − | Version = NM_001052822.1 GI:115445014 GeneID:4328720|
| |
| − | Length = 6090 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0215200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os02g0215200''''' '''''<=>''''' '''''OsHDAC2, HDAC2, HDA710''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | * Histone deacetylases (HDACs) modulate chromatin structure and transcription. |
| − | AP = Chromosome 2:6476078..6482167|
| + | * HDACs have been studied as negative regulators in eukaryotic transcription. |
| − | CDS = 6476374..6476536,6476707..6476771,6477736..6478176,6478935..6479165,6479282..6479373<br>,6479455..6479515,6481441..6481518,6481666..6481737|
| + | * The '''''OsHDAC1''''' gene encoded a protein of approximately 57 kDa that shared 73.5%, 72.7%, 79.9%, and 57.1% amino acid sequence identity with the '''''OsHDAC2, OsHDAC3''''', maize '''''RPD3''''', and human '''''HDAC1''''' proteins, respectively. |
| − | GCID = <gbrowseImage1>
| + | * '''''OsHDAC1''''' functions in the genome-wide programming of gene expression. |
| − | name=NC_008395:6476078..6482167
| + | |
| − | source=RiceChromosome02
| + | ===Expression=== |
| − | preset=GeneLocation
| + | * '''''OsHDAC1''''' was expressed at similar levels in the leaves, roots, and callus cells, whereas '''''OsHDAC2''''' and '''''OsHDAC3''''' were expressed in the roots and callus cells, but not in the leaves, exhibiting distinct tissue specificity. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ===Evolution=== |
| − | name=NC_008395:6476078..6482167
| + | * Genomic structures and Southern blot analyses revealed that '''''OsHDAC1''''', '''''OsHDAC2''''', '''''OsHDAC3''''' contained seven, six, and seven exons, respectively, and constituted a class I-type family in the rice genome. |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | * Department of Biological Science, Myongji University, Yongin 449-728, Korea, and |
| − | CDNA = <cdnaseq>cccacgcgctgctcgcccactacggcctcctcgccccggccaagatgcaggtgctccgcccgctccccgcccgcgaccgcgacctctgccgcttccactccgacgactacgtcgccttcctccgcgccgtcaccccggagacccagttcgaccagatccgctccctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagctccatgagcgagttctgtatattgatattgatatccatcatggagatggagttgaggaggcattctacacaacaaacagggttatgacagtctcatttcacaagtttggggattatttcccgggaacaggggacatccgcgatattgggtattcagaagggaagtattactgcctgaatgtcccgctggatgatggaattgatgatgacagctaccagtccatcttcaagccgatcatcagcaaagtcatggagatgtatcgtcctggtgcagtcgtgcttcagtgcggcgctgattcgttgtccggtgataggttgggctgtttcaatctctcaggcaaaggtcatgctgaatgtgttaagttcatgaggtctttcaatgttccgttgcttcttcttggtggtggtggatataccataagaaatgttgcacgctgctggtgttacgagacaggagttgcacttggtgaagagctacgggagaagttgccttataacgagtattatgaatattttggtccagaatacagtctttacgttgcagcaagtaacatggagaacagaaatacaaacaagcaattggaggaaataaaatgcaacattctggacaatctctcaaaacttcaacatgctcctagtgtccaatttgaagagcgaattcctgaaacaaagctacctgagccagatgaagatcaagatgatccagatgaaaggcacgaccctgactctgatatgctgttggatgatcacaaacctatgggacactcagcaagaagccttattcacaacatcggagttaagagagaaattactgaaacagagaccaaagatcagcatggtaagagattaacaactgaacataaagtaccagaaccgatggcagacgatcttggttcctccaagcaagttcctactgcggatgcaaattcgatggccatcaacgcgccaggcaacgccaagaatgaaccgggaagctcactatga</cdnaseq>|
| + | * Department of Bioscience and Biotechnology, Sejong University, Seoul 143-747, Korea |
| − | AA = <aaseq>PTRCSPTTASSPRPRCRCSARSPPATATSAASTPTTTSPSSAPS PRRPSSTRSAPSGFCYVNDIVLAILELLKLHERVLYIDIDIHHGDGVEEAFYTTNRVM TVSFHKFGDYFPGTGDIRDIGYSEGKYYCLNVPLDDGIDDDSYQSIFKPIISKVMEMY RPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSFNVPLLLLGGGGYTIRNVAR CWCYETGVALGEELREKLPYNEYYEYFGPEYSLYVAASNMENRNTNKQLEEIKCNILD NLSKLQHAPSVQFEERIPETKLPEPDEDQDDPDERHDPDSDMLLDDHKPMGHSARSLI HNIGVKREITETETKDQHGKRLTTEHKVPEPMADDLGSSKQVPTADANSMAINAPGNA KNEPGSSL</aaseq>|
| + | |
| − | DNA = <dnaseqindica>297..459#630..694#1659..2099#2858..3088#3205..3296#3378..3438#5364..5441#5589..5660#atcgcggcatcgctcgcctcctctgcttcgcttccttctccagcaagcacccgaccacaacacacacgcgagctcctcgacctcgagagagagagaaaacccaaccccgaattcggcggcggaggcggaggcagcggcgatggacccctcgtcggcgggcgccggcggcaactcgctggcgtcggcgtcgtgcggcgacgcgcagaagcggcgggtgtgctacttctacgatccggaggtgggcaactactactacgggcagggtcacccgatgaagccccaccgcgtgaggatgacccacgcgctgctcgcccactacggcctcctcgccccggccaagatgcaggtgctccgcccgctccccgcccgcgaccgcgacctctgccgcttccactccgacgactacgtcgccttcctccgcgccgtcaccccggagacccagttcgaccagatccgctccctccgccgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacgcctactgccagacctacgcgggggcctccgtcggcgccgccgtcaagctcaaccacggcacccacgacatcgccatcaactggtccggcgggttgcaccacgccaagaagtccgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagctccatgaggtgacgtcatcctattccgctcgtacttgtgtttgttcgtttttttttttgggttcgtttaatgtttcgaatagattaggagtagtactatttggatgggtggtttgtttaatttttcgaatagatagattacttgatgtgtaagttgggtgggtcaatgaagacggaagcaaaaatcatcttgacttctttctcttcagttgctctgattttgtcgtgtacagttcgatcgatcttccgctaaattttgatcggtaggaaatattaatcatgtgtaagtgtaaatgaaatggctatctgtagacagaaattggattaactttttgctcaacttaatctcatatatattcgttacgcgattacacattgtctgaatagtatgtcatattggcacgtgcagaattatgtattaacaaatttattcagatttttgttttcctggataaaagctcatgtacgttgatgaatcatgctgaatgtatgtatgtatttctagttgatataatgatgttccaaagagagagaatgatatgacgacgaacttgctgcgtttgttattaaatttgcccatgatgtacactgttaaagctatgtactccctccgtccaaaaaaaaaaagtgaatctaggactggatgtgatatattatagtacaatgtctagattcgttgtactaggatgtgtcacatccagtactaggttggttttttatgggacgatggagtacgacgtacacaattagaatgttcattggacggttcatgataagagattgatttgattgaaacgtattcagaacaagaggtgattaatcagacagatctgaagaatgtatgttgcgtaaagacaatcctagattatcatgaacagttgaaagtttgaaaacagatcagatgttttttcccctatttggtctagttgtcttcttgtgctaaaccactaatatgctgtcttcatatttacagcgagttctgtatattgatattgatatccatcatggagatggagttgaggaggcattctacacaacaaacagggttatgacagtctcatttcacaagtttggggattatttcccgggaacaggggacatccgcgatattgggtattcagaagggaagtattactgcctgaatgtcccgctggatgatggaattgatgatgacagctaccagtccatcttcaagccgatcatcagcaaagtcatggagatgtatcgtcctggtgcagtcgtgcttcagtgcggcgctgattcgttgtccggtgataggttgggctgtttcaatctctcaggcaaaggtcatgctgaatgtgttaagttcatgaggtctttcaatgttccgttgcttcttcttggtggtggtggatataccataagaaatgttgcacgctgctggtgttacgaggtatctatactttcccccgtttttttttccttatgcctttaacaaacaattaattaattctattaattatggatgacaaagcaaagccatgagctcggtaatgtgttagaacctaatttgcttttgtgtttccactttgttccttgctcagcatcaagaacttgtcttctagtagttggtacctactgcctggctttgtttattgatccatgttgctgtaattttacaatcaccaaactaagattttggtttgtactgagcagatgactgaaatgcacagaacacctatctcccatttacatgtaatgcttaatgtatttattttctactctgtttcattcaaatgcattaatttgtgagaacttgtgcagtaacaaatcatccggtgtttctcaaagcattaaagtgtggttatttttaaacagataagtatcaggcaaggcactgctagctaactgttaacccttgcaaaatcatatgcttcaggccaccacctgttcctcagttgttagctttcatcagagatgtctttaataaattagcaacccaaaatctggtctctttggaccttgcaagcctggtttcgttgccttttgtgaatttataaatctgaacacacaacaggctaaacatggcgaacaagtgtgaatggctgcacttatgcttgcttgagtaaattatctcttatatcaggaacacctgttgctacagctatggttttatcctctgactgtttatttggttttttatttggccagacaggagttgcacttggtgaagagctacgggagaagttgccttataacgagtattatgaatattttggtccagaatacagtctttacgttgcagcaagtaacatggagaacagaaatacaaacaagcaattggaggaaataaaatgcaacattctggacaatctctcaaaacttcaacatgctcctagtgtccaatttgaagagcgaattcctgaaacaaagctacctgaggtgagtctccaggcttcctaatattataagcatgaaaaaaaaagatgtcttggaagtgataactcaagggctgactgaatgtattcgtgtcctgtacatatgtgctcattattcagccagatgaagatcaagatgatccagatgaaaggcacgaccctgactctgatatgctgttggatgatcacaaacctatgggacactcagcaaggtatctatttttcctttttctaaaagctgtattaaattttgtttaattctgtgccctgcctcatgttatattttcatttagaagccttattcacaacatcggagttaagagagaaattactgaaacagagaccaaagatcaggtaccttttcctcagttcattccaatgagcggtgctgtcctttctcattcataaatttcaacacacgacgtccaccattttattttgagatgtctcctttttagctaaatccttagaactaacagtatacttactccattcttttattaacatgtgcccttttgtttaaggggctattgcttatttgacccctttttgaatcctaactaccaatttgaccctactttttagagtttacttatttgaccctccttttcagaaacgaagctcccgtctgaccctgtttccattagtccgttaagttttaatttaaaacaaaaaaaaagaaatacaactaatattcataatacccagaataccgttagaaaaccctatgcatccaccaaaccctatccacatttctctccttgcggcgacggcggcgacttgcggcgagacggcgagccggtgccgccaccccctcagatcggcgccgccctggtgacgacgacgatgagccggcaccggccctagtgacgacgacgatgagctggcaccggccctagtgacgatgacgacgacgaggagtggcggcggcggctcatcgacgacgaagagccgaagccggcgccctgctgacgaggacgaggacgacgacgaagagccggagccggcgccgccaccccctcagatctggcgccaccgccgctgcgtcctccctccttccgcacgcttgcgccagcgccggccccctcccccgcctcctccctccttccgggcgcttgcgccgctgccgccgtcgccacctcctccctccttccgctcgcctgcgccgccgtcgttcctccctccctccacgagccaggacggccgctcgccccctccgtgcgcccccgccgcaactcaccccctccgtcagccgccgctgcctccctccgccccctctccctcagccccctcaaagcgccgccgccgccggcccatcagtcgccgccccgtggaggagaggagaagagaagagaagagagaagagaggagaggagaagaaggaactgcgggtgggtcccacatgtaatagagtcaaatgagtaaggacaaaagagacattttgtgcttcagttaacaccgttagatgcccttaacagaacagggtcatacgggagcttcgtttttgaaaaggagggtcaaataagcaaactttaaaaagtagggtcaaattggtagttagggctcaaaacggggtcaaataagcaattgtcccgtttaaagaaggtggcattccccttttgggtttatttatatacttgctccgtttcatattataagtcgtttgacttttttcctagtcaattttttttagtttgtccaaatttataaaaaaatatattagtattttcagcataaaacaaacatgttatcaaaatgtattcagtgtaagatttaataaaactagtatggtattttagattttgctatttttttctataaatttggtcaaacttagttaagtttgattaggaaaaaggttaaatgacttataatatgaaagtatggaacgtagggagtaacaatgaggttttctttatagaattctgttcttgctggcttgctgctatatgtgaattataatcttatccatatcggtgctagaaacatagtgaaattctcttgtgctgttgagttgtggaggaagactggtgtgctgatgaaaacatgtgctcatcatgtattgacattttcatctaaatgaaatttaaggccgcattggttgtacctttttttatctcacaggatttttttttgggttgtgcataatctcatccagattatttagaatctaccttgcatttatgcgaaacgagccctttgaaattcttgcagcacggacttgcatctttgtgtgatcttttgttgaactaacactttctgatttacacattctgcagcatggtaagagattaacaactgaacataaagtaccagaaccgatggcagacgatcttggttcctccaagcaagttcctgtaagtcgtcgtcttctctatccatctgcaaatccatagcacaaactctgcattgcataatgcctatatggatatagaattatccaacaccatggtttaatctgctctaacaaatcttttcatcttcacattgcttatcaacgatagactgcggatgcaaattcgatggccatcaacgcgccaggcaacgccaagaatgaaccgggaagctcactatgaactaacccacttcaggccaccagctcttatgccacggattcctgcatgctattagttacttactccgaggtgttgtatgactgtttcttctgtaggagtttacaaattacaactgtttcttttgttgaagaattccaaagtgtccaggcaatactggacgtggagacattagtctgatcaatgtactgcagagtacagaacatgtaacatgaaccaagttacagtgtatagtcttttagactgttagatggaactttcaggcgaaatgcctgtgcctacttgtgtgtgctctctgttggttgtttttcgttaaaatattttgttccggtttatcatgtacttcctacgtttttatgtatgagttgttttaaagagacaaataaatctattttttaatttataatagttaatacttaattaattatgtgct</dnaseqindica>|
| + | ==References== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052822.1 RefSeq:Os02g0215200]|
| + | <references> |
| − | }}
| + | * <ref name="ref1"> |
| − | [[Category:Genes]] | + | Jang IC, Pahk YM, Song SI, Kwon HJ, Nahm BH, Kim JK. Structure and expression |
| − | [[Category:Japonica mRNA]]
| + | of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1 |
| − | [[Category:Oryza Sativa Japonica Group]] | + | overexpression in transgenic plants leads to increased growth rate and altered |
| − | [[Category:Japonica Genes]] | + | architecture. Plant J. 2003 Feb;33(3):531-41. PubMed PMID: 12581311.</ref> |
| − | [[Category:Japonica Chromosome 2]]
| + | </references> |
| − | [[Category:Chromosome 2]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
