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| − | Please input one-sentence summary here.
| + | The rice '''''Os01g0917400''''' was reported as '''''OsC3H12''''' in 2012 <ref name="ref1" /> by researchers from China. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os01g0917400''''' '''''<=>''''' '''''OsC3H12''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. <ref name="ref1" /> <ref name="ref2" /> |
| − | | + | * CCCH-type zinc finger proteins have essential functions in various developmental processes in plants. |
| | + | * CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins. |
| | + | * CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins. |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance. |
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| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs. |
| − | | + | * Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" /> |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China |
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| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| − | | + | * <ref name="ref1"> |
| | + | Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc |
| | + | finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: |
| | + | 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type |
| | + | zinc finger family in maize: genome-wide identification, classification and |
| | + | expression profiling under abscisic acid and drought treatments. PLoS One. |
| | + | 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; |
| | + | PubMed Central PMCID: PMC3391233. |
| | + | </ref> |
| | + | </references> |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | GeneName = Os01g0917400|
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| − | Description = Zinc finger, CCCH-type domain containing protein|
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| − | Version = NM_001051736.2 GI:297598192 GeneID:4324354|
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| − | Length = 4380 bp|
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| − | Definition = Oryza sativa Japonica Group Os01g0917400, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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| − | AP = Chromosome 1:41762392..41766771|
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| − | CDS = 41762575..41762757,41763236..41763562,41764312..41764605,41764700..41764819,41765302..41765364<br>,41765738..41765898,41766452..41766623|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008394:41762392..41766771
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008394:41762392..41766771
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggacgacgccggaagggcctccgctccagcggtggtgacggtgacggcctccgccgccgcccccacgcctcctcttcctcctcctccgcctcccccccctccctcgcagctccccgccaccgccgccgccacggacgagccttcccacgaccccgccgctctctatggagagggtatgtggcagcagatgaccatgagcggcagtggcgctatgcaacctggaccatatcctgagcggtccggagaaccggactgcacttactacctcaggactggattgtgcaggttcggtatgagctgcaggttcaatcatcctcaggataggaatctggctattgcctctgccagaatgaaaggagaataccctgagaggatggggcaaccagaatgtcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcccagagaaaaagctggaattgcagggagggtgcagctaaacacattaggatatccactccgaccgagtgaaaaggagtgtgcatattacttaaaaacaggacagtgtaaatatgggaatacatgtaaatttcaccatccagaacttttcaatgctatggcttcttcacgtggttcacctatttatccttctgtacattcctctgcaaccgcgggtccaccttatactggaacaatggctagctgggcttttccaagaggttcttttattccaagccctagatggcagaatccctcaaattatgcaccgatgattgtaccgcaaggtcttgttcaagtaccaagctggaactcatatactggccaaatgatgcctgtttcatcttctgagagtcgactgcagtccccaggggctcaacaaacctatggaacttctcagcaagttgatgccagtgcaggcaatcagggaatgttgtcaccctacagatctagttcatatcctgtacctcaatacgcattgcagagagagaatgtatttcctgagagacctgatcaaccagaatgtcaatactacatgaagactggagactgtaaatttggtgcggtgtgcaagttccatcatccccgggtgcgatcaatgcctactccagattgtgtcttgagtccagtgggtcttccactacgtccgggagaagaactgtgcaagttctattctcgctatggcatctgcaagttcggcgcgaattgcaaatttgaccatccaacgatggctcctccaatgggagtgtatgcctacggctctgcttcaactaatgtacctatggttcggcgtctcctgcaatccccatccgcatccgcgtacacttcctaa</cdnaseq>|
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| − | AA = <aaseq>MDDAGRASAPAVVTVTASAAAPTPPLPPPPPPPPPSQLPATAAA TDEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCR FNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGR VQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSS ATAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPV SSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPD QPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGI CKFGANCKFDHPTMAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS</aaseq>|
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| − | DNA = <dnaseqindica>4015..4197#3210..3536#2167..2460#1953..2072#1408..1470#874..1034#149..320#cacctcctcaccgccgcgccaccgatcacccgccccccacctccaccgccgccgccaccgcccgtcgccggagctccgaggatggcatcccgcgtcgccgccgccgccgcggcgatcgcgtgatggcccgcgccgcagctcgccgccgatggacgacgccggaagggcctccgctccagcggtggtgacggtgacggcctccgccgccgcccccacgcctcctcttcctcctcctccgcctcccccccctccctcgcagctccccgccaccgccgccgccacggacgagccttcccacgaccccgccgctctctatggaggtttggatttctcctgcgctttttaccctgcgcgcttgattggtcggtcggtggaattggggtttggaggggattaattctgagtaggtttagctctccggtgcgtagtgtttcgtgatttttctcatggatttaactagcagctactccgctggtatttttgttatgaatcacggagtaataataatccatcgaatcatattgcaacggaaactactccttgtaggcgcgtaagtgaggttttcgtggtgtgactcattctggttagacagtgatgtgcttatcagctatcctttttttttttttacaatttcatgtttaacctgtgatacatctagaatgagtggatgctattgtagaattttcgttactaccacaagtgagatattagcgaatcaagtggtgtttgggtctgtttattgtgtttgtgccgttgctggtgaaatgtgggtagttttatagcgtgaccttattgacgccgaacaactttcatcttgtgtgcttgttggtcttggatttttgtttcatgtggtgtgtgcaatgttggttgcagagggtatgtggcagcagatgaccatgagcggcagtggcgctatgcaacctggaccatatcctgagcggtccggagaaccggactgcacttactacctcaggactggattgtgcaggttcggtatgagctgcaggttcaatcatcctcaggataggaatctggtgaatagatacttgacccaactgttcttatgtagcattattgtttcttatcacactgattcatggggtaatctcagtcaggatgtcatcattaggttgtagtttagaagaataggctgaaactggggaaggactacgcaatggagcatgttcagctgtatgtaatgtaacccatgtttcatgataagcagagacccattctcctttggacaattgccaccagcaggcataggccgagtgatgcattacagatttaaattagtgactaccatttttctgtaaattatatcttatattcaattctgatcgttttatcttttcttcatacctcatgtttttattctcaagttagattggatctgtttaatgttaggctattgcctctgccagaatgaaaggagaataccctgagaggatggggcaaccagaatgtcaggtaattatggttacttgaactcaggccagggtttattagttaacaatggctagcaatctactgcatatgcattctgtgacaagaaatggtttgtctggtcgtatatgctttgaaaaaacatgtagctagaaaggaggtattgaatttgtgcaccataggttgacaaaaggttgaagttcatgtgagagcctagatccctagacttaatctttattctttcttcttcatgtgaaaacggaaaccagacaagaattacatgcattagttgtgcattcatgcagcaacaacagaacagctagactagcttcagttttctccaaattataatcacacaattgcagattgtccttgtgtaaggaaactagctgtttttgtttgtctatgtttctagagttgacattatgcaatttagagtggtgtagtttttttattaagttggacaggtgttgaaatgaaataatttctcaaaattttctgttcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcccagagaaaaagctggaattgcagggagggtgcagctaaacacattaggatatccactccgaccggtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctgtttgcttctgtagagtgaaaaggagtgtgcatattacttaaaaacaggacagtgtaaatatgggaatacatgtaaatttcaccatccagaacttttcaatgctatggcttcttcacgtggttcacctatttatccttctgtacattcctctgcaaccgcgggtccaccttatactggaacaatggctagctgggcttttccaagaggttcttttattccaagccctagatggcagaatccctcaaattatgcaccgatgattgtaccgcaaggtcttgttcaagtaccaagctggaactcatatactgtaagatcatttcttctcacagtcatagacatatagtggagacgtgattttcccaatcatggattgtttacgttggctttcatgctctgttaatttcctaacaatctgggttgatctttaattgctctcgaccctgttaaaatataaaactgaattgcaaaaatataccattattaactttagttgtgatcttcatcagaactatactgactccacaggccactagtaatgttgcatatcaaatcccacttcctacaatgatggtttctctcatttaactaggtatgaagtgatttattcaatggaaagaactatgtgatgattgctgaatagttctcttttgggcatgaactaatgttctttgtggttttgtttctgtataaatggcattgttgtgtgctatggtgtttctaattgattaataatcctttgtagatccattgactgcagcttgccctacaatttaagtttggctgctactgaactaaatgttctttgtggttttgtttctgtataaatgggattgttgtgtgctatggtatttctaattgattaataatcctttgtagatccgttgactgcagcttgccctacaatttaagtttggctgctacagtttatatcctctgatttgtttagaacactaatatttattttttgaaagtgaaaagctataacattggaatccactcttacaccaattgctggaatcatactaaagttgattttttgtgattttgcttttcaagggccaaatgatgcctgtttcatcttctgagagtcgactgcagtccccaggggctcaacaaacctatggaacttctcagcaagttgatgccagtgcaggcaatcagggaatgttgtcaccctacagatctagttcatatcctgtacctcaatacgcattgcagagagagaatgtatttcctgagagacctgatcaaccagaatgtcaatactacatgaagactggagactgtaaatttggtgcggtgtgcaagttccatcatccccgggtgcgatcaatgcctactccagattgtgtcttgagtccagtgggtcttccactacgtccggtaagttactacaaacctttttgtacttatgttccagtgacaattatttgtgttctcatgttccacgtatcactttaatgttcatggttgatcattgtaccgcctcatctcttttagaggatcaagagtatatgcctgtcttaactttttctttctctggtccagtctttccgctgatattaagatgaattttacaacaaaaaatgtgctgcctgtgtatgaaggttcagaggcatagttcataattttaccctgttctcaattaggaaatgtattttgcaaggtcataaagtcttgacattgatgatcaaatattttctagagctaaaatttcataatcaaatatgacagttccacggcagtagataaagagtacccactgtatatattagtatgaagattaacacttgaaaaaacctttgattgttcctataacacctaatgattgactatgacacggctgtttcgagattttcagggagaagaactgtgcaagttctattctcgctatggcatctgcaagttcggcgcgaattgcaaatttgaccatccaacgatggctcctccaatgggagtgtatgcctacggctctgcttcaactaatgtacctatggttcggcgtctcctgcaatccccatccgcatccgcgtacacttcctaaggcggcgtcctggcagttgtgacccaaaccaccgtgatgtataaaaaagtccatcgcacgcccgtctcaggcgctgtgtgaatgttgccaccccctcctaactccccggaatcaaagttctgtaaattgagttgctaccggagatgtacagtttattttttgttaatgcagatctttgggaag</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051736.2 RefSeq:Os01g0917400]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
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| − | [[Category:Chromosome 1]]
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