Difference between revisions of "Os04g0607600"

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(Created page with "{{JaponicaGene| GeneName = Os04g0607600| Description = Cation transporter family protein| Version = NM_001060345.1 GI:115460419 GeneID:4336927| Length = 5149 bp| Definiti...")
 
 
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{{JaponicaGene|
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The rice '''''Os04g0607600''''' was reported as '''''HKT1;4''''' in 2016 <ref name="ref1" /> by researchers from Japan, Italy and USA.  
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GeneName = Os04g0607600|
 
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Description = Cation transporter family protein|
 
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Version = NM_001060345.1 GI:115460419 GeneID:4336927|
 
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Length = 5149 bp|
 
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Definition = Oryza sativa Japonica Group Os04g0607600, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os04g0459000''''' '''''<=>''''' '''''OsHKT7''''','''''HKT7'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
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|
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* OsHKT1;4-mediated Na+ transport in stems contributes to Na+ exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.
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Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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AP = Chromosome 4:31132702..31137850|
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===Expression===
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CDS = 31133384..31133582,31133769..31133990,31136688..31137769|
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* Heterologous expression analysis was performed using a salt hypersensitive mutant of S. cerevisiae (strain G19).
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GCID = <gbrowseImage1>
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* OsHKT1;4 expression increases Na+ hypersensitivity of yeast cells promoting Na+ over-accumulation. The OsHKT1;4 cDNA from rice cultivar Nipponbare was constitutively expressed in strain G19 of S. cerevisiae under the control of the GAP promoter.
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name=NC_008397:31132702..31137850
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* G19 cells harboring the empty vector or expressing OsHKT1;4 were grown on the arginine phosphate (AP) medium containing 1 mM KCl with or without the addition of 50 mM NaCl. 
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source=RiceChromosome04
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preset=GeneLocation
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===Phenotypic analysis===
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</gbrowseImage1>|
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* phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress.
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GSID = <gbrowseImage2>
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name=NC_008397:31132702..31137850
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===Subcellular localization===
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source=RiceChromosome04
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* To determine the localization of the OsHKT1;4 protein in plant cells, we fused EGFP at the N-terminus end of OsHKT1;4 (EGFP-OsHKT1;4 was shown to be functional in X. laevis oocytes) and placed under the control of the CaMV35S promoter.The result strongly indicated that EGFP-OsHKT1;4 localizes to the PM of rice protoplasts. However, by repeating the transformation experiments several times, we often observed that EGFP-OsHKT1;4 was also present inside the cells and clustered in punctate-like structures.  
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preset=GeneLocation
+
 
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</gbrowseImage2>|
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You can also add sub-section(s) at will.
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CDNA = <cdnaseq>atgcccacgtcgcggcgcgcgctcgccggcggcgctttgtccatgcacgtcgcctacttcctcgccatctcctgcctcggctacggcctcctcggggtgctcaaggtgcgggagcccggcgccgcgccgcgccgcatcgaccgcttcttcaccgccgtgtcggccgccacggtgtcgagcatgtccaccgtcgagatggaggtgttctccaacggccagctcgtggtgctcaccgtcctgatgctcctcggcggcgaggtgttcgtctcgctcgtggggctcgcgtccaagtggtccaagctgcggagcgacgccatggacagatcccggcgcgtcgagagccacggcgacgtcgcgctcgccgacatcgacggcggcgacgtcgagaacccgacgtcgtcgggagaggaggcggcgagccgacgccgcccgatggacgcggacacgctgcggcacaatgcggtgcgcgcgctgttctacatcgtgctcgccatcttcgcggtggtgcacgtcgtcggcgccgtggccgtcgcggcgtacgtgctcgcgtcgccgggcgcgaggcggacgctgggggacaagtcgctgaacacgtggacgttcgcggtgttcacgacggtgtcgacgttctccaactgcgggttcatgccgacgaacgagaacatggtggtgttcaagcgggacgcgccgctgcagctgctgctggtgccgcaggtgctggcggggaacacgctgttcgcgccgctgctggcggcgtgcgtgtgggcggcggcggcggcgacgcggcgggaggagctcgtggagatggcgagggaggggggcagggcggcggcggccgggtacgcgcacctgatgccggcgcggcggtgctggatgctggcggcgacggtggcggcgttcgtcgccgtgctgatggcgctggtgtgcggcatggagtggggcggggcgctgcaggggatgagcccgtgggagaaggtggtgaacgcgctgttcctcgccgtgaacgcccggcacaccggcgagtccaccgtcgacctctccatcctcgcgccggccatcctcgtgctcttcgtcctcatgatgtatctacctccgtacacgacgtggttcccatttgaagagaattccactactaaggatagtaatgcagagaaccagggaatcagactgctcgagagtacacttttgtcacaactctcctacctgaccatctttgtcattgccatctgcatcaccgagagaagaaagctcaaagaagaccccctcaacttcagtgtgctaagcattgttgtcgaagttgtcagtgcatatggaaatgtggggttctcaatgggctacagttgcagtagacagatcaatccagaccatctctgcacagataaatggactggtttcgtagggagatggagcgactctggcaaactgatactcatttttgtgatgttctttgggaggctcaagaagttcagcatgaaaggaggcaaagcctggaaacttagttag</cdnaseq>|
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AA = <aaseq>MPTSRRALAGGALSMHVAYFLAISCLGYGLLGVLKVREPGAAPR                    RIDRFFTAVSAATVSSMSTVEMEVFSNGQLVVLTVLMLLGGEVFVSLVGLASKWSKLR                    SDAMDRSRRVESHGDVALADIDGGDVENPTSSGEEAASRRRPMDADTLRHNAVRALFY                    IVLAIFAVVHVVGAVAVAAYVLASPGARRTLGDKSLNTWTFAVFTTVSTFSNCGFMPT                    NENMVVFKRDAPLQLLLVPQVLAGNTLFAPLLAACVWAAAAATRREELVEMAREGGRA                    AAAGYAHLMPARRCWMLAATVAAFVAVLMALVCGMEWGGALQGMSPWEKVVNALFLAV                    NARHTGESTVDLSILAPAILVLFVLMMYLPPYTTWFPFEENSTTKDSNAENQGIRLLE                    STLLSQLSYLTIFVIAICITERRKLKEDPLNFSVLSIVVEVVSAYGNVGFSMGYSCSR                    QINPDHLCTDKWTGFVGRWSDSGKLILIFVMFFGRLKKFSMKGGKAWKLS</aaseq>|
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==Labs working on this gene==
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DNA = <dnaseqindica>4269..4467#3861..4082#82..1163#gctcatccacaagctcgccgagccagccgttgcaccggccgcgccggagcgagcacacggcggccgcgtgcgtgctccaatatgcccacgtcgcggcgcgcgctcgccggcggcgctttgtccatgcacgtcgcctacttcctcgccatctcctgcctcggctacggcctcctcggggtgctcaaggtgcgggagcccggcgccgcgccgcgccgcatcgaccgcttcttcaccgccgtgtcggccgccacggtgtcgagcatgtccaccgtcgagatggaggtgttctccaacggccagctcgtggtgctcaccgtcctgatgctcctcggcggcgaggtgttcgtctcgctcgtggggctcgcgtccaagtggtccaagctgcggagcgacgccatggacagatcccggcgcgtcgagagccacggcgacgtcgcgctcgccgacatcgacggcggcgacgtcgagaacccgacgtcgtcgggagaggaggcggcgagccgacgccgcccgatggacgcggacacgctgcggcacaatgcggtgcgcgcgctgttctacatcgtgctcgccatcttcgcggtggtgcacgtcgtcggcgccgtggccgtcgcggcgtacgtgctcgcgtcgccgggcgcgaggcggacgctgggggacaagtcgctgaacacgtggacgttcgcggtgttcacgacggtgtcgacgttctccaactgcgggttcatgccgacgaacgagaacatggtggtgttcaagcgggacgcgccgctgcagctgctgctggtgccgcaggtgctggcggggaacacgctgttcgcgccgctgctggcggcgtgcgtgtgggcggcggcggcggcgacgcggcgggaggagctcgtggagatggcgagggaggggggcagggcggcggcggccgggtacgcgcacctgatgccggcgcggcggtgctggatgctggcggcgacggtggcggcgttcgtcgccgtgctgatggcgctggtgtgcggcatggagtggggcggggcgctgcaggggatgagcccgtgggagaaggtggtgaacgcgctgttcctcgccgtgaacgcccggcacaccggcgagtccaccgtcgacctctccatcctcgcgccggccatcctcgtgctcttcgtcctcatgatgtgagtgctctctgtttctctctctgacctaagctctctcagggtctcagctcttcaacctagctagtactccatctgtctcataagttttcgcttttactatttgaccacttgtcttattcaaaaaattttgtaattatttttttttgacttactttattatctaaagtattttaagcataacttttcgttttttatatttgcacaaatttttttgaataaaacgagtggtcaaacagtgcaagcaaaaactcaaaatcccttatattataggacggaggaagtacttgtttccaagcttcctgcattgtacactataatattctagaaccatagtcttttattactactatcctagcccaaaaatataataacatagaattagactaaatacattttaatactacgaatctggataaagtagtatagatttgtactacttaaatatgtcctgtcctttctatgctgttatattgtggacaaagggagtagctagtaggtacgcaaaccatttacatcatcacattaaaatgggaactagttttaccatgcatgttaactttactctccggacctctagaacatatgttttccttttcattagttctcctaccaattttgacattgttagtagcatgttttgcgattaaatcacaaactataaatacatagaaatgtttcgttgcaacatgcatatatgtggaggtgagccatgcatgcgacccataacaatgacacaatgccaatacctttgtcccaaagtgtattaggttgtgttcgttaccggtggttgaaagcaaatttctcatacatgaaaaatggaacggtctaatagcacttggttaattcggtattagctttaaaaacttaaaaattagattaattaatatgctcttttaaagtatttttttataaaaaccatactatttaacaatttaagaaacgtgcgtgcgaaaaacgtaagagtgttgcaaagaacgcaaccttattgcattgccgagtgtagtggcacttggcatcgatgtccttgagtgtaaaatgtcaggatctctcaggtggaaactgcaaaaccacttgaattattgagtaaaatatcggatggtcatatcataatgacaaattaaattacaagtactaatagtgaacgagtgatgataggagatgtaacggccggtggcaagtgggttctcttctgcaatggaatcttcttcggttcttcccttctccgtacgtaatagtcacggacaaaagcacatcaaaacactataaactcgtcaataattcttcgtatcctaattaatttgctcatcggccacagcaagaggacacatgtttcttttctgtggtaggacagtcccaacccataacactagacatggtttccataaactctacatcatcaagaagtactagacactactcttccaatgcaaacaccactatttcatacttcaatttaatgctacttatctcacatgatgtcttggatgttgtgtagaaaccatgtctctctttcctcatttattcacttgcatattattttttgtcctaagtagcaacttatttaatgctatggacatcatcctaattattgggttgagaatggccttaggtaggtagatgcatgtgatggagagtagtttcaaacgtcaaaacactgtcccatttcccagttcgtgaccataggtaggagttgaccgtgcgttgaccctttctcctagatttttgacagatttttttttatttttgccaaagaagaaaaggatagctctcctcctagcttcacagaaaccacaacgcagcacaccacttcaacttgcaagaacaccacaatcaatttgctgaaaggtaggagtattaatattccaagtctccattcaaaagcctgcatgcatcacatgccacaccttctgtcaacctgagaatatgctctccgcgttctcagcaaatctggtcacctgggaggttgatgactattacttctaattttgttcatgtcaaaatgggaggcgcatagttgctagaatttgttccaatctttggttcttccagatgattatggctcaattttcacatgcaattccataaaattcgccatctttccccagttgatgcatggagtacaaaatagtggagcacagtagtcgtcattcgtcaacttttgcagcctggtttaggaactgggatgtgtgcctctgaaaatgacctgcatggctaaagcagggtgatatctcctgccgattgtcgtagcgcgtgcaaaggaatttcttcaccggccagcagttgttcccatattgttctctcaaggccatatgcttgtgaatccaagcttccagtcagttgagccattgttttcatcttattgtcgcatcatttacagagaatataaccaagcaccagaatgttcttgcacgtcacctgaaagatcaaaccttagacaagcagagctgcaactccttccctgaattatttctcaataatgatctgcttttgaacatccgaagatgataatccacccaagggtgactttctgatcgcatttcgttaagcagctgcatcgacatgcatgcattttcaatgcccaaaataagcaactaatcactgaaactttaattggaaagattgctgcaaattaactgatgtctgtttaaactcgtaccgtttgttgtctcatattctgcttcatcttgcctccaggtatctacctccgtacacgacgtggttcccatttgaagagaattccactactaaggatagtaatgcagagaaccagggaatcagactgctcgagagtacacttttgtcacaactctcctacctgaccatctttgtcattgccatctgcatcaccgagagaagaaagctcaaagaagaccccctcaacttcagtgtgctaagcattgttgtcgaagttgtcaggcaagtcagactaaatggtttcttacctgagaaaaaaaatgcagaccaagtaaattaacaatttatctgatgaaaacagcaaaacacaaagtaacacttgtcaggtatttctgaatcttaataatacacaatgaaaatagtaatgttttctttcgtggaatctgacggatctgcccacatttgcagtgcatatggaaatgtggggttctcaatgggctacagttgcagtagacagatcaatccagaccatctctgcacagataaatggactggtttcgtagggagatggagcgactctggcaaactgatactcatttttgtgatgttctttgggaggctcaagaagttcagcatgaaaggaggcaaagcctggaaacttagttagatcttagatgcagtaccagctgaacattgcaggtccctgagggtaggaaaaaagtataaagatgtactctttctcttccgtttgtttgtatattcattttcacatagacaggaaccttccactgtcatccttgcacaaagctcaccctccactccaagtgttggcagtttcagatcaggtgaatgaaagttcatcacaagaaatcaacataggctaattaacctgattcacttcacatagagatgcttctgtcactggctccctgcaatgaccatttattgcatccatgtaatgctagtaaaaggccggatgtcattgtgatggctgcaatacttaaatacccacatgttaaaagatatgtagatgtctatcaagtggtgatcagttcatacagtacgtccagaagtactttcttctgaagcaagggcatctagaagaacctgagagctgagatcacaaagattgaaaaaacactagattgcttatcctagtcactacacttttctgatagaaattaaaaaggacacacgtgcaaccaagggtgcatcagtgaaaaaaagagagaataaaagggaaaagggaaagaaaatctccactacacattgtgcattctggtacacttgttcccactacagaagatgttgattatatagcaataaagcaaacaatctagtatttgtgg</dnaseqindica>|
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060345.1 RefSeq:Os04g0607600]|
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* Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
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}}
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* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
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[[Category:Genes]]
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* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
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[[Category:Japonica mRNA]]
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* State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
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[[Category:Oryza Sativa Japonica Group]]
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==References==
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[[Category:Japonica Genes]]
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<references>
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[[Category:Japonica Chromosome 4]]
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* <ref name="ref1">
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[[Category:Chromosome 4]]
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Suzuki K, Yamaji N, Costa A, Okuma E, Kobayashi NI, Kashiwagi T, Katsuhara M,
 +
Wang C, Tanoi K, Murata Y, Schroeder JI, Ma JF, Horie T. OsHKT1;4-mediated Na(+)
 +
transport in stems contributes to Na(+) exclusion from leaf blades of rice at the
 +
reproductive growth stage upon salt stress. BMC Plant Biol. 2016 Jan 19;16:22.
 +
doi: 10.1186/s12870-016-0709-4. PubMed PMID: 26786707; PubMed Central PMCID:
 +
PMC4719677.
 +
</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Latest revision as of 03:12, 19 January 2018

The rice Os04g0607600 was reported as HKT1;4 in 2016 [1] by researchers from Japan, Italy and USA.

Annotated Information

Gene Symbol

  • Os04g0459000 <=> OsHKT7,HKT7

Function

  • OsHKT1;4-mediated Na+ transport in stems contributes to Na+ exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.

Expression

  • Heterologous expression analysis was performed using a salt hypersensitive mutant of S. cerevisiae (strain G19).
  • OsHKT1;4 expression increases Na+ hypersensitivity of yeast cells promoting Na+ over-accumulation. The OsHKT1;4 cDNA from rice cultivar Nipponbare was constitutively expressed in strain G19 of S. cerevisiae under the control of the GAP promoter.
  • G19 cells harboring the empty vector or expressing OsHKT1;4 were grown on the arginine phosphate (AP) medium containing 1 mM KCl with or without the addition of 50 mM NaCl.

Phenotypic analysis

  • phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress.

Subcellular localization

  • To determine the localization of the OsHKT1;4 protein in plant cells, we fused EGFP at the N-terminus end of OsHKT1;4 (EGFP-OsHKT1;4 was shown to be functional in X. laevis oocytes) and placed under the control of the CaMV35S promoter.The result strongly indicated that EGFP-OsHKT1;4 localizes to the PM of rice protoplasts. However, by repeating the transformation experiments several times, we often observed that EGFP-OsHKT1;4 was also present inside the cells and clustered in punctate-like structures.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
  • Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
  • State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
  • State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

References

  1. ↑ Suzuki K, Yamaji N, Costa A, Okuma E, Kobayashi NI, Kashiwagi T, Katsuhara M, Wang C, Tanoi K, Murata Y, Schroeder JI, Ma JF, Horie T. OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress. BMC Plant Biol. 2016 Jan 19;16:22. doi: 10.1186/s12870-016-0709-4. PubMed PMID: 26786707; PubMed Central PMCID: PMC4719677.

Structured Information