Difference between revisions of "Os06g0142350"

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(Created page with "{{JaponicaGene| GeneName = Os06g0142350| Description = Similar to Early nodulin| Version = NM_001187664.1 GI:297724458 GeneID:9271477| Length = 802 bp| Definition = Oryza...")
 
 
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{{JaponicaGene|
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The rice '''''Os06g0142350''''' was reported as '''''OsENOD93-1''''' in 2009 <ref name="ref1" /> by researchers from Canada.  
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GeneName = Os06g0142350|
 
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Description = Similar to Early nodulin|
 
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Version = NM_001187664.1 GI:297724458 GeneID:9271477|
 
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Length = 802 bp|
 
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Definition = Oryza sativa Japonica Group Os06g0142350, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* Development of genetic varieties with improved nitrogen-use efficiency (NUE) is essential for sustainable agriculture.
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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* The rice '''''OsENOD93-1''''' is an early nodulin gene with positive effects on nitrogen-use efficiency.
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|
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* The '''''OsENOD93-1''''' gene responded significantly to both N induction and N reduction.
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Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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AP = Chromosome 6:2207761..2208562|
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===Phenotypic analysis===
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CDS = 2207873..2208094,2208209..2208270,2208381..2208561|
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* Transgenic rice plants over-expressing the OsENOD93-1 gene had increased shoot dry biomass and seed yield.
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GCID = <gbrowseImage1>
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* Transgenic plants accumulated higher concentrations of total amino acids and total N in roots.
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name=NC_008399:2207761..2208562
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* A higher concentration of amino acids in xylem sap was detected in transgenic plants, especially under N stress.
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source=RiceChromosome06
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preset=GeneLocation
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===Expression===
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</gbrowseImage1>|
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* The '''''OsENOD93-1''''' gene was expressed at high levels in roots of wild-type (WT) plants
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GSID = <gbrowseImage2>
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* In situ hybridization revealed that '''''OsENOD93-1''''' is expressed in vascular bundles, as well as in epidermis and endodermis.
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name=NC_008399:2207761..2208562
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source=RiceChromosome06
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===Subcellular localization===
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preset=GeneLocation
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* The '''''OsENOD93-1''''' protein product was localized in mitochondria.
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</gbrowseImage2>|
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CDNA = <cdnaseq>tctcatctcatctcgctcagcactactgatccaaccagtaggcgattctctccacctcccagctacttcacttcaggactagtttcttctcagctccatcgatcttgctcgacaatgtcgacgacggtgacccgtgctcacctggagcagaggctcgccctcgccaagcgctgctcccgggaggcgaaccttgcaggggttaaggcggctgctgtcgcgaccatcgcctctgccgttccaaccctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggcgctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcctctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctccttccagggcaccggccgccctcaccctgccttcttcaggccatga</cdnaseq>|
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You can also add sub-section(s) at will.
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AA = <aaseq>SHLISLSTTDPTSRRFSPPPSYFTSGLVSSQLHRSCSTMSTTVT                    RAHLEQRLALAKRCSREANLAGVKAAAVATIASAVPTLASVRMLPWAKANINPTGQAL                    IICTAAGMAYFVAADKKILSLARRHSFENAPEHLKNTSFQGTGRPHPAFFRP</aaseq>|
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DNA = <dnaseqindica>469..690#293..354#2..182#atctcatctcatctcgctcagcactactgatccaaccagtaggcgattctctccacctcccagctacttcacttcaggactagtttcttctcagctccatcgatcttgctcgacaatgtcgacgacggtgacccgtgctcacctggagcagaggctcgccctcgccaagcgctgctcccggggtacgtacgcacgcacactaaaccaccatgtttaatctcgctttgtcttgcattccatggcgctaataactgaatatatacaaactgatgtatgcttcgtcgatctgcagaggcgaaccttgcaggggttaaggcggctgctgtcgcgaccatcgcctctgccgttccaaccgtgagtgtgctcagatgctactagcttcttctaattcctccttgtgttgattcttcagcagagagtaggtgtactaacttattagctgcatatgtgtgttgtttcatcgatcagctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggcgctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcctctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctccttccagggcaccggccgccctcaccctgccttcttcaggccatgatcagcaagctagtgctgcttgcaatctgctgcagaaagtagctagtgttgtgtacttggatgtaatatactgtatgctccagcttgtattaataaacaatcttaatttgatg</dnaseqindica>|
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==Labs working on this gene==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187664.1 RefSeq:Os06g0142350]|
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* Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada N1G 2W1,
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}}
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* Syngenta Biotechnology, Inc., Research Triangle Park, NC 27709, USA,
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[[Category:Genes]]
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* Department of Genetics, Fudan University, Shanghai 200433
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[[Category:Japonica mRNA]]
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* Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada N1G 2W1
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[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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==References==
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[[Category:Japonica Chromosome 6]]
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<references>
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[[Category:Chromosome 6]]
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* <ref name="ref1">
 +
Bi YM, Kant S, Clarke J, Gidda S, Ming F, Xu J, Rochon A, Shelp BJ, Hao L,
 +
Zhao R, Mullen RT, Zhu T, Rothstein SJ. Increased nitrogen-use efficiency in
 +
transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene
 +
identified from rice expression profiling. Plant Cell Environ. 2009
 +
Dec;32(12):1749-60. doi: 10.1111/j.1365-3040.2009.02032.x. Erratum in: Plant Cell
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Environ. 2010 Feb;33(2):304. Clark, Joseph [corrected to Clarke, Joseph]. PubMed
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PMID: 19682292.
 +
 
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</ref>
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</references>
 +
 
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Latest revision as of 11:52, 2 March 2017

The rice Os06g0142350 was reported as OsENOD93-1 in 2009 [1] by researchers from Canada.

Annotated Information

Function

  • Development of genetic varieties with improved nitrogen-use efficiency (NUE) is essential for sustainable agriculture.
  • The rice OsENOD93-1 is an early nodulin gene with positive effects on nitrogen-use efficiency.
  • The OsENOD93-1 gene responded significantly to both N induction and N reduction.

Phenotypic analysis

  • Transgenic rice plants over-expressing the OsENOD93-1 gene had increased shoot dry biomass and seed yield.
  • Transgenic plants accumulated higher concentrations of total amino acids and total N in roots.
  • A higher concentration of amino acids in xylem sap was detected in transgenic plants, especially under N stress.

Expression

  • The OsENOD93-1 gene was expressed at high levels in roots of wild-type (WT) plants
  • In situ hybridization revealed that OsENOD93-1 is expressed in vascular bundles, as well as in epidermis and endodermis.

Subcellular localization

  • The OsENOD93-1 protein product was localized in mitochondria.

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada N1G 2W1,
  • Syngenta Biotechnology, Inc., Research Triangle Park, NC 27709, USA,
  • Department of Genetics, Fudan University, Shanghai 200433
  • Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada N1G 2W1

References

  1. ↑ Bi YM, Kant S, Clarke J, Gidda S, Ming F, Xu J, Rochon A, Shelp BJ, Hao L, Zhao R, Mullen RT, Zhu T, Rothstein SJ. Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling. Plant Cell Environ. 2009 Dec;32(12):1749-60. doi: 10.1111/j.1365-3040.2009.02032.x. Erratum in: Plant Cell Environ. 2010 Feb;33(2):304. Clark, Joseph [corrected to Clarke, Joseph]. PubMed PMID: 19682292.

Structured Information