Difference between revisions of "Os06g0348800"

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(Created page with "{{JaponicaGene| GeneName = Os06g0348800| Description = Homeodomain-like containing protein| Version = NM_001064118.2 GI:297605772 GeneID:4340977| Length = 3776 bp| Defini...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os06g0348800''''' was reported as '''''OsGLK1''''' in 2009 <ref name="ref1" /> by researchers from Japan.  
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GeneName = Os06g0348800|
 
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Description = Homeodomain-like containing protein|
 
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Version = NM_001064118.2 GI:297605772 GeneID:4340977|
 
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Length = 3776 bp|
 
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Definition = Oryza sativa Japonica Group Os06g0348800, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os06g0348800''''' '''''<=>''''' '''''OsGLK1,GLK1'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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* '''''OsGLK1''''' regulates chloroplast development under the control of light and phytohormones, and that it is a key regulator of chloroplast development.
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AP = Chromosome 6:14146398..14150173|
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CDS = 14146493..14146815,14146915..14147038,14147127..14147267,14148805..14149155,14149275..14149334<br>,14149465..14149584,14149773..14149922|
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===Phenotypic analysis===
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GCID = <gbrowseImage1>
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* The rice expression-microarray and northern blot analyses, showd that a large number of nucleus-encoded genes involved in chloroplast functions were highly expressed and transcripts of plastid-encoded genes, psaA , psbA and rbcL , increased in the '''''OsGLK1'''''-FOX calli.  
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name=NC_008399:14146398..14150173
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* Transmission electron microscopy showed the existence of differentiated chloroplasts with grana stacks in '''''OsGLK1''''' -FOX calli cells.  
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source=RiceChromosome06
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* However, in darkness, '''''OsGLK1'''''-FOX calli did not show a green color or develop grana stacks.
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preset=GeneLocation
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* Developed chloroplasts was found in vascular bundle and bundle sheath cells of coleoptiles and leaves from '''''OsGLK1'''''-FOX seedlings.
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</gbrowseImage1>|
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* The '''''OsGLK1'''''-FOX calli exhibited high photosynthetic activity and were able to grow on sucrose-depleted media, indicating that developed chloroplasts in '''''OsGLK1'''''-FOX rice calli are functional and active.
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GSID = <gbrowseImage2>
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name=NC_008399:14146398..14150173
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===Expression===
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source=RiceChromosome06
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* the endogenous OsGLK1 mRNA level was observed to be increased synchronously with the greening of wild-type calli after transfer to plantlet regeneration medium.
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preset=GeneLocation
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</gbrowseImage2>|
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CDNA = <cdnaseq>atgcttgccgtgtcgccggcgatgtgccccgacattgaggaccgcgccgcggtggccggcgatgctggcatggaggtcgtcgggatgtcgtcggacgacatggatcagttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggtgatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggcaatcgcgacgagtggaggcgaaggtgtgcaggaccaggaggtgcccaccgtcgagctcttggcgcctgcggacgacgtcggtgtgctggatccgtgcggcgatggagccgcggcggttgaggccaagtcttcgtcgccgtcatcgacgacgtcgtcgtcgcaggaggctgagagccggcacaagtcatccagcaagagctcccatgggaagaagaaagcgaaggtggactggacgcctgagcttcaccggaggttcgtgcaggcggtggagcagctcggcatcgacaaggccgtgccgtcgaggatacttgagatcatggggatcgactctctcacccggcacaacatagccagccatcttcagaagtaccggtcacacagaaaacacatgattgcgagagaggcggaggcagcgagttggacccaacggcggcagatttacgccgccggtggaggtgctgttgcgaagaggccggagtccaacgcgtggaccgtgccaaccattggcttccctcctcctccgccaccaccaccatcaccggctccgattcaacattttgctcgcccgttgcatgtttggggccacccgacgatggacccgtcccgagttccagtgtggccaccgcggcacctcgttccccgtggcccggcgccaccatgggttccaccgccgccgccgtcggaccctgctttctggcaccacccttacatgagggggccagcacatgtgccaactcaagggacaccttgcatggcgatgcccatgccagctgcgagatttcctgctccaccggtgccaggagttgtcccgtgtccaatgtataggccattgactccaccagcactggcgagcaagaatcagcaggacgcacagcttcaactccaggttcaaccatcaagcgagagcatcgacgcagctatcggtgatgttttatcgaaaccgtggttgcctttgcctcttggactgaagccaccttcagtggacagtgtgatgggcgagctgcagaggcaaggcgtagcaaacgttcctccagcgtgtggatga</cdnaseq>|
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You can also add sub-section(s) at will.
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AA = <aaseq>MLAVSPAMCPDIEDRAAVAGDAGMEVVGMSSDDMDQFDFSVDDI                    DFGDFFLRLEDGDVLPDLEVDPAEIFTDFEAIATSGGEGVQDQEVPTVELLAPADDVG                    VLDPCGDGAAAVEAKSSSPSSTTSSSQEAESRHKSSSKSSHGKKKAKVDWTPELHRRF                    VQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHMIAREAEAASWTQR                    RQIYAAGGGAVAKRPESNAWTVPTIGFPPPPPPPPSPAPIQHFARPLHVWGHPTMDPS                    RVPVWPPRHLVPRGPAPPWVPPPPPSDPAFWHHPYMRGPAHVPTQGTPCMAMPMPAAR                    FPAPPVPGVVPCPMYRPLTPPALASKNQQDAQLQLQVQPSSESIDAAIGDVLSKPWLP                    LPLGLKPPSVDSVMGELQRQGVANVPPACG</aaseq>|
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DNA = <dnaseqindica>96..418#518..641#730..870#2408..2758#2878..2937#3068..3187#3376..3525#aacctaacgtatcatttacttccattgcactgcacatcctgtgagttcgttgtctgagtgagagctggacgtgctgcaccgagctcctggccgagatgcttgccgtgtcgccggcgatgtgccccgacattgaggaccgcgccgcggtggccggcgatgctggcatggaggtcgtcgggatgtcgtcggacgacatggatcagttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggtgatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggcaatcgcgacgagtggaggcgaaggtgtgcaggaccaggaggtgcccaccgtcgagctcttggcgcctgcggacgacgtcggtgtgctggatccgtgcggcgatgtcgtcgtcggggaggagaacgcggcgtttgccggggctggagaggagaagggagggtgtaaccaggacgatgatgcgggggaagcgaatgtcgacgatggagccgcggcggttgaggccaagtcttcgtcgccgtcatcgacgacgtcgtcgtcgcaggaggctgagagccggcacaagtcatccagcaagagctcccatgggaagaagaaagcgaaggtgcaaccctcaaggggcatgcacacaatttagctccacctgtggcattacaagccgttgctcatgctcatgctgcatggttctgcaggtggactggacgcctgagcttcaccggaggttcgtgcaggcggtggagcagctcggcatcgacaaggccgtgccgtcgaggatacttgagatcatggggatcgactctctcacccggcacaacatagccagccatcttcaggtgcgtgcatggtggaatctcctgtctcacactctcactttacgtggggaaatattttttatttcctaattgtaccgtccttcgttggactataaaatacttcaaaccaaacatttatttaaatcatggctatgcacgacgttggttccagttttcaaattctaatcgtgttatttttttataatatgagtattattcttacagcaagacgcgtgtgtatatattatatatatgaaaccttattcctactagcttcattttgtaggttacctggtttctcagtgtagatcgatgataaatgaactatctaataattttatttgagctccgataaagatatgtaggtttggcccgttggtttgttatttactttagtttctatgtagatttctttttgttccatgtaaaagtagatatatgatgtagatcccaggttttaattcatatattttctaaaagaaactacaaacttaattgggggaaaaactcccagtgataacttcatacaatacggaaattggtattattggcttaaaaactaacgttacgtcatcagataaagaatgccttttttaaaaaaaatggacagcaatccatctatgtaaggttttacccttagttaattgtagaacttcaattcccagctagataagctgcagatttcagtctccaaatctttttgaattttaaagtttgactttgagaataattttaggtacaatttttatttatgttcttaacaaccatgaaaggacaaccagggaaacataagtgataagaaaacctctaataacaagttgtaggatttaaaatcatctttggaaaacatttttgccataactcaatatatgtggtaaactgagtactatcaaacgaacatatgtacacgaagaacttcaactcacacggcatgtcctgcagtagaacaaaaatttgaacctggagcacatggatatcataaattacaaaaatccaaagttgagacactgttacagagcgtgacagtgaagattttcatcactctgtccagtgtccaccctttctcgcttcccacagtaccggtcatctgctgatcatctatgagctgtaagttcacggattgaactgtaagtttgtagcctattgtttggactttcagttctgtgtagtactctagtgggacctgttttcaccgcataaagtgtgatatattttggtccacataacagtacatatggtatttgctttctacacccagcagaagaaccatattactccctccgtccttaaatataagtatttctgactatgaatctggacaactgttgttgtccagattcatagctaaaagttgttatattttgggatggatgtagtatttataataataagatgtgttacatgttatttatttcgcaatggagggagtaagtcagaattgtgacttctatttacaagacatcttcaaattgttcaaacgaatatagtatagaccttgttattttgggatcgtcctggcccactaattgacttatcacttcatgtaaattatttgcagaagtaccggtcacacagaaaacacatgattgcgagagaggcggaggcagcgagttggacccaacggcggcagatttacgccgccggtggaggtgctgttgcgaagaggccggagtccaacgcgtggaccgtgccaaccattggcttccctcctcctccgccaccaccaccatcaccggctccgattcaacattttgctcgcccgttgcatgtttggggccacccgacgatggacccgtcccgagttccagtgtggccaccgcggcacctcgttccccgtggcccggcgccaccatgggttccaccgccgccgccgtcggaccctgctttctggcaccacccttacatgagggtaagtatgtgtatatacactataatgatattgtcaagtgcaatgcttagataccagagagcatatacgttagttttcaattggttcttaggatgtatatttgtttgatgtttctgtaggggccagcacatgtgccaactcaagggacaccttgcatggcgatgcccatgccagctgcggtaagatattatgtaattacttacatggaaatgtcacctctgcttgacatatagtttcagttaggtgacatttcatcactatagctagtctgcagaattttgatgggctggatggtatctcatgtttcagagatttcctgctccaccggtgccaggagttgtcccgtgtccaatgtataggccattgactccaccagcactggcgagcaagaatcagcaggacgcacagcttcaactccaggttcaaccagtaagtatatatcaaacatttgtaactataacttcatcagaaggaacataaatattgaagatccatactggcaatgtttagctgaaactatcatatctctaaccatataacttcatcacaaggaagattcagaagtttcttcatgaattaaattgcttcattttcattgttttaattttttttcccagtcaagcgagagcatcgacgcagctatcggtgatgttttatcgaaaccgtggttgcctttgcctcttggactgaagccaccttcagtggacagtgtgatgggcgagctgcagaggcaaggcgtagcaaacgttcctccagcgtgtggatgatatttgcatgatagattgatggttccgttactgactgattgcttatctggtcagttcaccaaaaaatgggaaaattcgccgacatgtccttttatttttcttttggcctagcgtttcttggacatctcgtttaatttttaacttgtgcagagttcgaaagacatctttgtttcgactccgggagaaattaacctgcgtattgtaaatgtaaaatgtattggccgtgagttctcagcagctaagaataaatt</dnaseqindica>|
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==Labs working on this gene==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064118.2 RefSeq:Os06g0348800]|
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* Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
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}}
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* Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
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[[Category:Genes]]
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* Department of Applied Biological Chemistry, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan
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[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==References==
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[[Category:Japonica Genes]]
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<references>
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[[Category:Japonica Chromosome 6]]
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* <ref name="ref1">
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[[Category:Chromosome 6]]
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Nakamura H, Muramatsu M, Hakata M, Ueno O, Nagamura Y, Hirochika H, Takano M,
 +
Ichikawa H. Ectopic overexpression of the transcription factor OsGLK1 induces
 +
chloroplast development in non-green rice cells. Plant Cell Physiol. 2009
 +
Nov;50(11):1933-49. doi: 10.1093/pcp/pcp138. PubMed PMID: 19808806; PubMed
 +
Central PMCID: PMC2775961.
 +
</ref>
 +
</references>
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Latest revision as of 12:41, 2 March 2017

The rice Os06g0348800 was reported as OsGLK1 in 2009 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os06g0348800 <=> OsGLK1,GLK1

Function

  • OsGLK1 regulates chloroplast development under the control of light and phytohormones, and that it is a key regulator of chloroplast development.

Phenotypic analysis

  • The rice expression-microarray and northern blot analyses, showd that a large number of nucleus-encoded genes involved in chloroplast functions were highly expressed and transcripts of plastid-encoded genes, psaA , psbA and rbcL , increased in the OsGLK1-FOX calli.
  • Transmission electron microscopy showed the existence of differentiated chloroplasts with grana stacks in OsGLK1 -FOX calli cells.
  • However, in darkness, OsGLK1-FOX calli did not show a green color or develop grana stacks.
  • Developed chloroplasts was found in vascular bundle and bundle sheath cells of coleoptiles and leaves from OsGLK1-FOX seedlings.
  • The OsGLK1-FOX calli exhibited high photosynthetic activity and were able to grow on sucrose-depleted media, indicating that developed chloroplasts in OsGLK1-FOX rice calli are functional and active.

Expression

  • the endogenous OsGLK1 mRNA level was observed to be increased synchronously with the greening of wild-type calli after transfer to plantlet regeneration medium.


You can also add sub-section(s) at will.

Labs working on this gene

  • Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
  • Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
  • Department of Applied Biological Chemistry, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan

References

  1. ↑ Nakamura H, Muramatsu M, Hakata M, Ueno O, Nagamura Y, Hirochika H, Takano M, Ichikawa H. Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells. Plant Cell Physiol. 2009 Nov;50(11):1933-49. doi: 10.1093/pcp/pcp138. PubMed PMID: 19808806; PubMed Central PMCID: PMC2775961.

Structured Information