Difference between revisions of "Os10g0516100"

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(Created page with "{{JaponicaGene| GeneName = Os10g0516100| Description = Similar to Glycine cleavage system H protein, mitochondrial precursor| Version = NM_001071595.1 GI:115482933 GeneID:4...")
 
(→‎Phenotypic analysis)
 
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{{JaponicaGene|
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The rice '''''Os10g0516100''''' was reported as '''''OsGDCH''''' in 2013 <ref name="ref1" /> by researchers from China.  
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GeneName = Os10g0516100|
 
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Description = Similar to Glycine cleavage system H protein, mitochondrial precursor|
 
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Version = NM_001071595.1 GI:115482933 GeneID:4349114|
 
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Length = 2042 bp|
 
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Definition = Oryza sativa Japonica Group Os10g0516100, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:135-Os10g0516100.png|right|thumb|327px|'''Figure 2.''' ''Phenotypes of OsGDCH-RNAi plants.<ref name="ref1" />.'']]
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os10g0516100''''' '''''<=>''''' '''''OsGDCH,GDCH'''''
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
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* Glycine decarboxylase complex (GDC) is a multi-protein complex, comprising P-, H-, T- and L-protein subunits, which plays a major role in photorespiration in plants.
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AP = Chromosome 10:20350039..20352080|
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* The '''''OsGDCH''''' is a typical photorespiratory gene
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CDS = 20350199..20350307,20350668..20350756,20351285..20351455,20351786..20351911|
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* Knockdown of the '''''OsGDCH''''' causes senescence of rice plants under ambient CO2
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GCID = <gbrowseImage1>
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===Phenotypic analysis===
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name=NC_008403:20350039..20352080
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* Under high CO2 (0.8%) conditions, in which photorespiration is inhibited, no substantial difference in phenotype was seen between the '''''OsGDCH'''''-RNAi plants and WT plants.
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source=RiceChromosome10
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* However, after growth under ambient CO2 (0.04%; photorespiratory conditions), obvious changes were observed in the SSPs. Yellowish spots resembling necrotic lesions appeared on the leaves after several hours of exposure to ambient CO2.
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preset=GeneLocation
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* As time progressed, the plants underwent a progressive change in leaf colour from green to yellow, usually starting from the tips or the margins and spreading towards the leaf base (Fig. 2).
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</gbrowseImage1>|
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* This phenotype mimicked a senescence syndrome (Quirino et al. 2000). The syndrome became more severe as time progressed, leading to a complete cessation of growth and finally to the death of SSPs, whereas these phenotypes were not seen in either the MSPs or WT (Fig. 2a–f).
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GSID = <gbrowseImage2>
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name=NC_008403:20350039..20352080
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You can also add sub-section(s) at will.
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source=RiceChromosome10
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preset=GeneLocation
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==Labs working on this gene==
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</gbrowseImage2>|
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* State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
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CDNA = <cdnaseq>atggctctgaggctgtgggctagctcagctgccaatgccctcaagatctcatgcagtggagccaccagggctgcacctgcctactcaatctccagatacttctccactgttcttgatgggttgaagtacagctcctctcatgagtgggtcaagaatgatggctctgtggccacaattggaattacagaccatgctcagggccatctgggagaggtggtgttcgtggagctgccggaggcgggggcgaaggtgagccagggaggtgcattcggcaacgtggagagtgtgaaggccaccagcgacatcaactcccccatctccggtgaggtcgtcgaggttaacgacaagctctctgagacacccggcctgattaactcaagcccgtacgaggacgggtggatgatcaaggtgaagccgagcagcccgtcggagctggacgccctgctggacccggccaagtacaccaagcactgcgaggaggaagacgctcactag</cdnaseq>|
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AA = <aaseq>MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYS                    SSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDI                    NSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEE                    EDAH</aaseq>|
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==References==
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DNA = <dnaseqindica>161..269#630..718#1247..1417#1748..1873#ctctcctcctgagccaaacaattccctatcccctcatctcactgcagctttccactatactaccaccaccactgagctgccactactcatccagctaactaggagaaggaaaaaagaagaacacagatactttggtaacaagcaagaaattggcacagaaatggctctgaggctgtgggctagctcagctgccaatgccctcaagatctcatgcagtggagccaccagggctgcacctgcctactcaatctccagatacttctccactggtatagctagcttgagtagtagaattcatatcaaataaattttctgttgccttttgcaacaaagcatgtggttgttacaatgttctggttcctgtacagtcttgcattgtgccatgctatccttgcacccagttataaattgctgtggcttccttttttcttttctttcttttttacattctatattgttacattgactggtccatgctgtagttatacaccggagacatactaaatgattgaaaagggaagggaataaaatttagaaattccagttgttgaaaagagttgagtatacttgttgtaactatggtccctgttgatttaagccatggtgatgatttcatgctggtattgcagttcttgatgggttgaagtacagctcctctcatgagtgggtcaagaatgatggctctgtggccacaattggaattacagaccatgctcaggtgagccaaccaaaggagaaaatattccatgcctttcatgtgcaacaagattagttaaagcttaatgcatttctaaacagggcctaagtgtcaatttgctgttgtattctaaactacgtggcatgctacaaaatcaaatattctgccctctgctgcaacaactaacaacccttttcctgatatgtcacagaacattttcctttactacttttaagaaatatgatgaagtacctttgctgtaactttttttttcaaactaaatagaacatgtcttttgttactttaataagaaacaagataaaggaactaacttccactgcagaatgctagccagttactttttagtgctacacagtaatgatggcaattatttgaaaacaaaagtaacagtaagatggggggtaaaaaataatttgattggacctgactagatatatatttttttagataatgaatttttattaatccggtctctgtattcatgagggatatacatagccatgactagatatgtatgtatactcgcagggccatctgggagaggtggtgttcgtggagctgccggaggcgggggcgaaggtgagccagggaggtgcattcggcaacgtggagagtgtgaaggccaccagcgacatcaactcccccatctccggtgaggtcgtcgaggttaacgacaagctctctgagacacccggcctggtatgtactcccaccgtctcaaagagagtataacctccgttaaaaaaaatcaacttttgaaaataaatctaaacatacatttgtgcatattcattctcagaagttactttttttaacatagggcatattaacaataacgctgtaaaattacatgtgtctcttttttttttcaagactggtagcatgtccctgtttaaaggtgttagtttaattaaccggaatgtctctttgttaatttaattcattagtactctccacaaactagaattacaaattcttttttgcgagacaattttcaaaccctaatgctactgccaatggtggtgacagattaactcaagcccgtacgaggacgggtggatgatcaaggtgaagccgagcagcccgtcggagctggacgccctgctggacccggccaagtacaccaagcactgcgaggaggaagacgctcactaggctcttcctctctgttttttttcttcccattttgtcactccgacctaatttctccctgttgcaacaactgctctgtatccgtatacgattaataactgaatcttcaggctttgccatgtgttcagttggttctctgaacttctggtgggtctatctatttatctatgct</dnaseqindica>|
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<references>
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071595.1 RefSeq:Os10g0516100]|
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* <ref name="ref1">
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}}
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Zhou Q, Yu Q, Wang Z, Pan Y, Lv W, Zhu L, Chen R, He G. Knockdown of GDCH gene
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[[Category:Genes]]
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reveals reactive oxygen species-induced leaf senescence in rice. Plant Cell
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[[Category:Japonica mRNA]]
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Environ. 2013 Aug;36(8):1476-89. doi: 10.1111/pce.12078. Epub 2013 Mar 12. PubMed
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[[Category:Oryza Sativa Japonica Group]]
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PMID: 23421602.
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[[Category:Japonica Genes]]
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</ref>
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[[Category:Japonica Chromosome 10]]
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</references>
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[[Category:Chromosome 10]]
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Latest revision as of 16:28, 19 October 2016

The rice Os10g0516100 was reported as OsGDCH in 2013 [1] by researchers from China.

Annotated Information

Figure 2. Phenotypes of OsGDCH-RNAi plants.[1].

Gene Symbol

  • Os10g0516100 <=> OsGDCH,GDCH

Function

  • Glycine decarboxylase complex (GDC) is a multi-protein complex, comprising P-, H-, T- and L-protein subunits, which plays a major role in photorespiration in plants.
  • The OsGDCH is a typical photorespiratory gene
  • Knockdown of the OsGDCH causes senescence of rice plants under ambient CO2

Phenotypic analysis

  • Under high CO2 (0.8%) conditions, in which photorespiration is inhibited, no substantial difference in phenotype was seen between the OsGDCH-RNAi plants and WT plants.
  • However, after growth under ambient CO2 (0.04%; photorespiratory conditions), obvious changes were observed in the SSPs. Yellowish spots resembling necrotic lesions appeared on the leaves after several hours of exposure to ambient CO2.
  • As time progressed, the plants underwent a progressive change in leaf colour from green to yellow, usually starting from the tips or the margins and spreading towards the leaf base (Fig. 2).
  • This phenotype mimicked a senescence syndrome (Quirino et al. 2000). The syndrome became more severe as time progressed, leading to a complete cessation of growth and finally to the death of SSPs, whereas these phenotypes were not seen in either the MSPs or WT (Fig. 2a–f).

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China

References

  1. ↑ 1.0 1.1 Zhou Q, Yu Q, Wang Z, Pan Y, Lv W, Zhu L, Chen R, He G. Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice. Plant Cell Environ. 2013 Aug;36(8):1476-89. doi: 10.1111/pce.12078. Epub 2013 Mar 12. PubMed PMID: 23421602.

Structured Information