Difference between revisions of "Os07g0508500"

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(Created page with "{{JaponicaGene| GeneName = Os07g0508500| Description = Protein kinase-like domain containing protein| Version = NM_001066280.1 GI:115472292 GeneID:4343342| Length = 3152 b...")
 
(→‎Annotated Information)
 
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{{JaponicaGene|
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The rice '''''Os07g0508500''''' was reported as '''''BRK1''''' in 2012 <ref name="ref1" /> by researchers from China.  
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GeneName = Os07g0508500|
 
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Description = Protein kinase-like domain containing protein|
 
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Version = NM_001066280.1 GI:115472292 GeneID:4343342|
 
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Length = 3152 bp|
 
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Definition = Oryza sativa Japonica Group Os07g0508500, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:108-Os07g0508500.png|right|thumb|327px|'''Figure 2.''' ''Meiotic Chromosome Behavior in the Wild Type and brk1-1 Mutant.<ref name="ref1" />.'']]
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os07g0508500''''' '''''<=>''''' '''''BRK1,OsBRK1'''''
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
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* '''''BRK1''''' may be required for normal localization of Aurora kinase before the onset of metaphase I, which is responsible for correcting the merotelic attachment.
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AP = Chromosome 7:19988887..19992038|
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* '''''BRK1''''' Is Essential for the Centromeric Localization of SGO1
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CDS = 19988919..19988966,19989046..19989133,19989352..19989455,19989533..19989604,19989687..19989776<br>,19989888..19990045,19990877..19990931,19991024..19991158,19991280..19991401<br>,19991653..19991842|
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* '''''BRK1''''' Is Required for Phosphorylation of Rice H2A-T134 during Both Meiosis and Mitosis
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GCID = <gbrowseImage1>
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* Depletion of '''''BRK1''''' Reduces the Tension across Homologous Kinetochores during Metaphase I
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name=NC_008400:19988887..19992038
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* '''''BRK1''''' Is Required for Correcting the Merotelic Attachment of Paired Sister Kinetochores during Metaphase I
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source=RiceChromosome07
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===Expression===
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preset=GeneLocation
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* During prophase I, chromosomal behavior in brk1-1 was quite similar to the wild type (Figures 2A and 2E). Whereas at the onset of anaphase I in brk1-1, although homologous chromosomes could separate equally, the two sister chromatids of each chromosome started to disassociate from each other (Figure 2F).
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</gbrowseImage1>|
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* During telophase I in brk1-1, the sister chromatids of most chromosomes completely separated, and this precocious dissociation resulted in scattered chromatids that failed to line up on the equatorial plate during metaphase II (Figure 2G).  
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GSID = <gbrowseImage2>
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* Consequently, sister chromatids were unequally separated at anaphase II in brk1-1, and the lagging chromosomes finally led to the formation of micronuclei during the tetrad stage (Figure 2H).
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name=NC_008400:19988887..19992038
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source=RiceChromosome07
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===Evolution===
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preset=GeneLocation
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* BRK1 Localizes to Kinetochores during Both Meiosis and Mitosis
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</gbrowseImage2>|
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CDNA = <cdnaseq>atgaataatttattggagaacattaatgttgatctgaagaagttcgctggctatcataagagcaataaggtctatcatggaaaggtgccattaacttcgcctcagaatgttttaagaaacaaagtcattgaattaggtggtagaaagtaccagatcaaaggttctcctggtactggtgcttttgcaaaagtttacaaagccagtgtcgatggtaatacagaagacctggttgctttaaagattcagaaaccaccatttccttgggaattttacatgtatcgccagcttgatacgcgcgtatctgatattgagagaccaagctttggctacactcatgaagtgcatgtatacgctgatgtcagtgtgcttgtttgtgattacctgccatacggaactcttctggatgttataaattctcatctagtacttgaacgccatatggatgaagttctatgcatatattacactatagagatgctgcgcatgttggaaacactgcacagcgttggcataattcatggtgatttcaagcctgacaatatgcttgtttgctacccaagtggagaaatcacagacgaaaccttcaaaggcgagacaagatccgagcggaatcaggggctctgccttgttgactggggccgtggcatcgacctgaacctcttcccatccggtgcggagttctacggcgactgccgaacctccgggttcagctgcgtcgagatgcaggaacagagagcctggacgtttcaggctgacacttacggcctctgcgtcatcgcgcacatgatgctacatgggacgcagatgagcatccagaagacgcccaggcccgatggaagctacatgtaccagcccacatcgccgttcaaaaggtactggaacgtggagctgtggaaaaacctcttctccacgctgctcaacgcgacctccaacggcagcgacgcggccgtgctccggagcctccggatgtccttccaggagtacctgtgcagcaaccggcagctcgtcggcaagctgaaccagcaactggccaagcagaagacctccctgtgcctatcctga</cdnaseq>|
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You can also add sub-section(s) at will.
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AA = <aaseq>MNNLLENINVDLKKFAGYHKSNKVYHGKVPLTSPQNVLRNKVIE                    LGGRKYQIKGSPGTGAFAKVYKASVDGNTEDLVALKIQKPPFPWEFYMYRQLDTRVSD                    IERPSFGYTHEVHVYADVSVLVCDYLPYGTLLDVINSHLVLERHMDEVLCIYYTIEML                    RMLETLHSVGIIHGDFKPDNMLVCYPSGEITDETFKGETRSERNQGLCLVDWGRGIDL                    NLFPSGAEFYGDCRTSGFSCVEMQEQRAWTFQADTYGLCVIAHMMLHGTQMSIQKTPR                    PDGSYMYQPTSPFKRYWNVELWKNLFSTLLNATSNGSDAAVLRSLRMSFQEYLCSNRQ                    LVGKLNQQLAKQKTSLCLS</aaseq>|
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DNA = <dnaseqindica>33..80#160..247#466..569#647..718#801..890#1002..1159#1991..2045#2138..2272#2394..2515#2767..2956#ctattttgctggatccatggtctgagtctactatgaataatttattggagaacattaatgttgatctgaagaagttcgctgtaagttgcatttactctatatgattcgctagtgtttatcttagctctcatcttggacggttgcccgaatccttgacagggctatcataagagcaataaggtctatcatggaaaggtgccattaacttcgcctcagaatgttttaagaaacaaagtcattgaattaggtataaactataatttcttgcttgtcagtcttttaccaaaactataatcatttttgtagtttggctcctttatgatccatgctctgtaagtcacaatgaatacataataatgctccttgaaaaaaaggaagaaatatacccttttttatttagaaaaaggccatttatattgatgacataacaaaagtttagttacaaatcccttttgttgcaccaaggtggtagaaagtaccagatcaaaggttctcctggtactggtgcttttgcaaaagtttacaaagccagtgtcgatggtaatacagaagacctggttgctttaaaggtgagtcatacttccatttgtcttactgaagcctgcttttttcatcagattcctctactgaacttgcccgtttgcagattcagaaaccaccatttccttgggaattttacatgtatcgccagcttgatacgcgcgtatctgatattgaggtacagaaattatctttaagaagaccataacatttgtaattgtaaaattatgattcacactgcaaaataattttacttccagagaccaagctttggctacactcatgaagtgcatgtatacgctgatgtcagtgtgcttgtttgtgattacctgccatacggaactcttctggtaaaatactttatgtattaatttttttttttgagatcatgatcatgcaaaactagcattttgtgcccggattagtgaatctgtgtttgataagatgcaaatcttttgcaggatgttataaattctcatctagtacttgaacgccatatggatgaagttctatgcatatattacactatagagatgctgcgcatgttggaaacactgcacagcgttggcataattcatggtgatttcaagcctgacaatatgcttgtttgctacccaaggtaagtagaggtaaccagcttagctttcaagttagaacacttgatggagcttcctccctcttcctcttgtgatctctaactgaaatatgggcaaaacacacacacacacacacacacacactctctctctctctctcacacagacacacacaaaactatccagtgaccattgacatcttacttttcataaaatcgacagatttattctagttgcaatatttgtgtgccgtccatttgcccagtgcccatattctcttgctatttgttttggacagatcttgttaccatgtttgtgggtgatgatgtctgtgctgtaaatattttactccaagcttcacaaccatctacaacttttataaactagatgttatatttaaactgatctaataacatagttttcaatgaaaatatttgacatggatggtcataacaacaagcatgttggtaagtggtcaatttgttggccccagatgttgggtttggtgggggcaaagatccttgctgatttactactgtttcaattactttatatgagcggttactggaatcttgcttgatggctccatcctccatgtttccgctgagatgacgattttttttgtcatttttgttggccatttgctgctattggcttgtttcggccaaaactcaattataacccatctagtacatgttacgcctgaaaaaaaaagaaagagtaaacctaatgctagtgtctgttcctttttgttctcgctatccaagtcttcacctcttcaatctttagcccttgtctcgacatgtaattttcgttcacccgcatctttgttttgcgtgtggtggtctgtgcagtggagaaatcacagacgaaaccttcaaaggcgagacaagatccgagcggaatcaggtcagcttctcaatcccaagttcccaacacgccgagaaacttggttaagatgttctggatatctcctgatgcttataggattcccattccaggggctctgccttgttgactggggccgtggcatcgacctgaacctcttcccatccggtgcggagttctacggcgactgccgaacctccgggttcagctgcgtcgagatgcaggaacagagagcctggacgtttcaggtatctgtaccctcccaagctacttactcaaaacctcctctcacctagacatctctgaaagcaacccctgcctgacgctgccagtttgtttgttggttggttgattggtttcttcctgcaggctgacacttacggcctctgcgtcatcgcgcacatgatgctacatgggacgcagatgagcatccagaagacgcccaggcccgatggaagctacatgtaccagcccacatcgccgttcaaaaggtgctttgatgccattgcctatacacctctttgataatttcctctatcccaaaatatagctactatgagatatttttcagtactatgaatctgaacaggtttagaaaatatctcatcctatgctagttagttatattttaagataaaggtagtagtaattaccatgattcgcagtagcgtaaataaatcagagattagattagatggcatatgtaacaggagctgtttgctgccattttgccccttgacaggtactggaacgtggagctgtggaaaaacctcttctccacgctgctcaacgcgacctccaacggcagcgacgcggccgtgctccggagcctccggatgtccttccaggagtacctgtgcagcaaccggcagctcgtcggcaagctgaaccagcaactggccaagcagaagacctccctgtgcctatcctgaccgagacatatacgcatctcgcgtttcatcctcatcatttttcccgattccctcgtgttgcctgtgtgtaaagtggtggagtataagataccttccgtaacttcgtagcacttcctctgtgcgtgcgtgtgcagcagtaattaacgtgccacatctccactttgaaagctgaaacatctactattgggccagatgg</dnaseqindica>|
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==Labs working on this gene==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066280.1 RefSeq:Os07g0508500]|
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* State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
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}}
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* College of Plant Protection,Yunnan Agricultural University, Kunming 650201, China
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[[Category:Genes]]
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==References==
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[[Category:Japonica mRNA]]
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<references>
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[[Category:Oryza Sativa Japonica Group]]
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* <ref name="ref1">
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[[Category:Japonica Genes]]
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Wang M, Tang D, Luo Q, Jin Y, Shen Y, Wang K, Cheng Z. BRK1, a Bub1-related
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[[Category:Japonica Chromosome 7]]
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kinase, is essential for generating proper tension between homologous
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[[Category:Chromosome 7]]
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kinetochores at metaphase I of rice meiosis. Plant Cell. 2012 Dec;24(12):4961-73.
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doi: 10.1105/tpc.112.105874. Epub 2012 Dec 14. PubMed PMID: 23243128; PubMed
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Central PMCID: PMC3556969.
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</ref>
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</references>
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==Structured Information==

Latest revision as of 15:50, 17 October 2016

The rice Os07g0508500 was reported as BRK1 in 2012 [1] by researchers from China.

Annotated Information

Figure 2. Meiotic Chromosome Behavior in the Wild Type and brk1-1 Mutant.[1].

Gene Symbol

  • Os07g0508500 <=> BRK1,OsBRK1

Function

  • BRK1 may be required for normal localization of Aurora kinase before the onset of metaphase I, which is responsible for correcting the merotelic attachment.
  • BRK1 Is Essential for the Centromeric Localization of SGO1
  • BRK1 Is Required for Phosphorylation of Rice H2A-T134 during Both Meiosis and Mitosis
  • Depletion of BRK1 Reduces the Tension across Homologous Kinetochores during Metaphase I
  • BRK1 Is Required for Correcting the Merotelic Attachment of Paired Sister Kinetochores during Metaphase I

Expression

  • During prophase I, chromosomal behavior in brk1-1 was quite similar to the wild type (Figures 2A and 2E). Whereas at the onset of anaphase I in brk1-1, although homologous chromosomes could separate equally, the two sister chromatids of each chromosome started to disassociate from each other (Figure 2F).
  • During telophase I in brk1-1, the sister chromatids of most chromosomes completely separated, and this precocious dissociation resulted in scattered chromatids that failed to line up on the equatorial plate during metaphase II (Figure 2G).
  • Consequently, sister chromatids were unequally separated at anaphase II in brk1-1, and the lagging chromosomes finally led to the formation of micronuclei during the tetrad stage (Figure 2H).

Evolution

  • BRK1 Localizes to Kinetochores during Both Meiosis and Mitosis

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
  • College of Plant Protection,Yunnan Agricultural University, Kunming 650201, China

References

  1. ↑ 1.0 1.1 Wang M, Tang D, Luo Q, Jin Y, Shen Y, Wang K, Cheng Z. BRK1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis. Plant Cell. 2012 Dec;24(12):4961-73. doi: 10.1105/tpc.112.105874. Epub 2012 Dec 14. PubMed PMID: 23243128; PubMed Central PMCID: PMC3556969.

Structured Information