Difference between revisions of "Os08g0531700"
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===Expression=== | ===Expression=== | ||
Please input expression information here. | Please input expression information here. | ||
| + | MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development. In recent years, there have been reports on genomic localization, protein motif structure, phylogenetic relationships, gene structure and expression of the entire MADS-box family in the model plant system, Arabidopsis. Though there have been some studies in rice as well, an analysis of the complete MADS-box family along with a comprehensive expression profiling was still awaited after the completion of rice genome sequencing. Furthermore, owing to the role of MADS-box family in flower development, an analysis involving structure, expression and functional aspects of MADS-box genes in rice and Arabidopsis was required to understand the role of this gene family in reproductive development. | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 02:56, 5 June 2014
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Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here. MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development. In recent years, there have been reports on genomic localization, protein motif structure, phylogenetic relationships, gene structure and expression of the entire MADS-box family in the model plant system, Arabidopsis. Though there have been some studies in rice as well, an analysis of the complete MADS-box family along with a comprehensive expression profiling was still awaited after the completion of rice genome sequencing. Furthermore, owing to the role of MADS-box family in flower development, an analysis involving structure, expression and functional aspects of MADS-box genes in rice and Arabidopsis was required to understand the role of this gene family in reproductive development.
Evolution
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You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os08g0531700 |
|---|---|
| Description |
Similar to Developmental protein SEPALLATA2 (Agamous-like MADS box protein AGL4) |
| Version |
NM_001068870.1 GI:115477478 GeneID:4346134 |
| Length |
5010 bp |
| Definition |
Oryza sativa Japonica Group Os08g0531700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:26595185..26600194 |
| Sequence Coding Region |
26595340..26595401,26595980..26596180,26597105..26597183,26597408..26597482,26597899..26597999 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:26595185..26600194 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:26595185..26600194 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcagagaaaaagaagaagaagaagaagaagaagccgcaatcactcctagtccttacaagctggagatcgatcgggatggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaaggcaatactacaaatctaaacataggctgtgtttagttcggtccaaagtttggaatttggttaaaattagagacgatgtgactgaaaagttgtgtatgtatgaaagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacgtcagaactacaaggacaaaacatctggttgaccaactgacggagcttcagagaaaggaacaaatggtttctgaagcaaatagatgccttaggagaaaactggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatga</cdnaseq> |
| Protein Sequence |
<aaseq>MAEKKKKKKKKKPQSLLVLTSWRSIGMGRGRVELKRIENKINRQ VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYA GPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRQYYKSKHRLCLVRSKVWNLVKI RDDVTEKLCMYERNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQ RKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPL DAAGEPTLQIGYPAEHHEAMNSACMNTYMPPWLP</aaseq> |
| Gene Sequence |
<dnaseqindica>156..217#796..996#1921..1999#2224..2298#2715..2815#3480..3579#3956..3997#4089..4130#4415..4572#4771..4843#caatccaacaaatctacataggaattactctttcggactcaaactcctcaattttttcccacttaaaaatccttcgccctaattaaagttcacccgttacaaatggagagcgatcgagctctcaactagcctaattcaagaggtgatgaagaaaaatggcagagaaaaagaagaagaagaagaagaagaagccgcaatcactcctagtccttacaaggttctgccgccgtggtgaggccaatggcacatactttcaggcttcagcccaccaaatggagacgccatacggcctatgctgttccaggcccaaattacaccggctaaaccccatacggcccatacatataccattcctggtccaaaaccggtgggttcccgagtagggaatcggacacggcccgactcaaacacacgcactctccaagtctcgagctccacgacgacgacgacgacgatgacgatggcgcacagggcaggggcaggcaggtcacatgtggtggtgaatggtgatggccatccatccatccaccaatgaaaaggcgagtcgtggtaaagaagacggatggacggatggatgggcatgggcggcgagcgatggacgcgacgcgacccatcctggtttcccgaaacgcgctacgctgccgagcatctagggtttcccacccggtacgaccttgccgaaaatggcacccactcaccatctccatccttttaatccccttcctccacctcgcttgctttcttgcagtggtggtggtggtggtggtgagatctagcttggttggttggttgcagctggagatcgatcgggatggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagaggttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatctgtcctgtccagatctgttcatgcatcatcaaaagctagctgcatctgccttttgcccggaattccagctgcatgctatgccggcttgatttctgcatacgatcttttgacaagaaacgagctgtggcgtgttcaaccgcacgctacctagctagctagattgctcttgcttccgtgggttttcacgccgggatagatctgggcaatatcctgggtttagggttttgcttcctggtccgtgtggtagatcggtgcacatctttagtttgccagttggtttccttctccgatctgtccgtcttacgtgcgatttcttcatgtgtggtctcggaactcgcaaaggaactgaaaagtttgcttatttacgaccttttcttctggatctgcaaggttctttgtttcccttagctaaatccttaaaagaagtagtccaatatatacttccatgcataatattgcaaaataaatgatggtttgttgataaccaaagtaaagagacataaaaactaactagagactttttttttcaaaaaaaaaaaagaagaatcttgtctactgtgttatatatcagtagtatatatacagagatcaacggcttcagtctactaatcaaacaatataatctcatagggggacttgcaagaaccatatgttccatttctgaatgtattttaagctagaatgcatgacaacgaaaaaagggcattgtggtagtaaatgtgccatgcccctattgtagatcttaatcatcgttaatctctccttcttgtgatcccatgcatgcactaattttaattaattcctcatgtcttttgaactttgtagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgaggtaattattaattgtgttcattaattacacccattattatgcagcaaactaattttggtttgaccacataagtgttttctcacatgtaacattacttttctactaccataatagcatgtgcatatgaaggagatggtttgcaattgcaatatgttatatacatatgtcctacacatgcattttcaaaacatcgaattaatggtcaactattttgtttctttcagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaaggcaagttatgatgcattttcactgataagcttctctcttgatgatgcttttaggtttgcatttagacgattttatgcaagagcggttttgtaccacaaaaatatgattttcgatgtcatagcgctgcaagaatgatgtgaataaactcatagtatttctttttatagtgctgtcgttataaacaaaaaaaatatcatgttaacagtaattaaatgttgattccagctaattgcttggatgttatcagcctagagaaccttaggtgggcatcctaattttaaggtatagtagcacaactactagctattataggcgggctatcaataggtagaataataaaaacaaagcacaaacagtgtaccatatactccctccgtctcataaaaaaaccaacctagtactggatgtgacatatcttagtactacaaatctaaacataggctgtgtttagttcggtccaaagtttggaatttggttaaaattagagacgatgtgactgaaaagttgtgtatgtatgaaaggtttgatgtgatggaaagttggaagtttggaaaaaaaaactttggaactaaacacatcaatacctttgttcagattcattatactagaatgtgtcacatctgatcctagattcgtttttttgggacagagggagaaagtcacaagctcatagaataaatcaatcatacaactagtataaagcatctcaaatctattttgttttatcaaaatctagttgaggacacacatatatacaatccaggttcttatagcattctcaccattaattaattaaccaatagatcaagaaatcaactgtactactcaaaattagacaggcagctgtcgaccagctgataagatctatatataacatgatgtatatacatgtcattggtaaaaaaaaatcacatacatgcatgtcatagtagtactactcgcaggtcgtagttccaacatgcaactgcataatgaagaagtacatagtattgagtattagcttagctgttacacatgtaataatacatcattttgaaacacacgctgtaagttaaattttatttggaaacattagtagttaattaacttcatttttgtacttcaatatagtaattgaaagtggaagtctaattttcatatgtacataactaatactcttctacccctatgtgtggactatgacagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacgtcagaactacaagggtaatgattgtttttgggtgctagatcacaaacaagtaccatgcatgcatgcatgtactccctctgtgaaaaaaaaaattccaatcctagttatgacagtgtgtacacgtgtatctaagtttctagttagaattgtgttttgtattggacgaagggtgtaggtgtgtagcactagtttttgaagtaacacaaaggagtacatacacaccatatatgttgcatgcagatgcaattgacttaaatgcagccctattgttgatcgtgtggatagctacctcacgcaattattaatttcctgcgtaaaatttataggaacccatgcatgaaagatctgaattgtaaatcttacttgtcaatgcttttaatcctcttgtagacaaaacatctggttgaccaactgacggagcttcagagaaaggtatatttttaagaattatcaataaaaagtgttgatcacatttttcttccttagcagtagtagatattgaccctgtttacttaatttacaggaacaaatggtttctgaagcaaatagatgccttaggagaaaagtaagttatacaactcttccatctttctccttaggagaaaagcaagttatacaactcttccatctaaagaaaggtttattcaactaatcattcatgaccaagaatcttaagataaacctcaactgaactatggtgtgtttcctatatatatgaattatggagtatatagtccatgatcaatataatgcagatatcatggaatggaagccctgattaatgtagtgaaagggatattgaaaataactgcaatgtgatatcatttaaattgttttgaaaaactgtagctggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtatgctcatatgatctcttcctatatatacttggaaccaattgccggtctatatatataatctgatccaggacaatatagctagctaggctagtttttgtatatgcacacttaatattgtatagatctttaaataatggctatatttttttgcttatatatgcctctgaaagtctgaatgtgatacctgttttgcaggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatgatgatgacggggacaatgaattacgaaataacaaggatatgtggcatatatgtggtgccgcatacatgcatgtatcatggctagctacttaattggagtgatggatttgaactagtttcgtatgtagcctgtttgtgtgtaacttgtgtgagatactaccttaaaaac</dnaseqindica> 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