Difference between revisions of "Os05g0277000"
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===Function=== | ===Function=== | ||
May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence | May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence | ||
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| − | |||
Subcellular location: Secreted › cell wall | Subcellular location: Secreted › cell wall | ||
By similarity. Membrane; Peripheral membrane protein | By similarity. Membrane; Peripheral membrane protein | ||
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Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain. | Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain. | ||
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===Expression=== | ===Expression=== | ||
Revision as of 09:39, 11 June 2014
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Contents
Annotated Information
Function
May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence
Subcellular location: Secreted › cell wall
By similarity. Membrane; Peripheral membrane protein
Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.
Expression
Protein name
Os05g0277000 protein
Protein sequence
2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202 query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206 gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208 gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213 gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208 gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207 gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212 gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214 gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283 gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214
2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229
query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233
gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235
gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240
gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235
gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234
gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239
gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241
gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311
gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242
This family contains allergens lol PI, PII and PIII from Lolium perenne.
Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os05g0277000 |
|---|---|
| Description |
Similar to Expansin Os-EXPA3 |
| Version |
NM_001061613.1 GI:115462956 GeneID:4338279 |
| Length |
1006 bp |
| Definition |
Oryza sativa Japonica Group Os05g0277000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:11429537..11430542 |
| Sequence Coding Region |
11429537..11429843,11429990..11430308,11430422..11430542 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:11429537..11430542 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:11429537..11430542 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag</cdnaseq> |
| Protein Sequence |
<aaseq>MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF</aaseq> |
| Gene Sequence |
<dnaseqindica>700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag</dnaseqindica> |
| External Link(s) |
