Difference between revisions of "Os08g0559300"
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==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | 1.Bioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan; | |
| + | 2.Field Production Science Center, University of Tokyo, Nishi-Tokyo, Tokyo 188-0002, Japan; | ||
| + | 3.RIKEN (The Institute of Physical and Chemical Research), Wako-shi, Saitama 351-0198, Japan; | ||
| + | 4.Department of Chemistry, Joetsu University of Education, Joetsu-shi, Niigata 943-8512, Japan; | ||
| + | 5.Science and Technology Research Institute, Chiang Mai University, Chiang Mai 50200, Thailand; | ||
| + | 6.Molecular Biology Laboratory, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; | ||
| + | 7.Plasma and Beam Physics Research Facility, Department of Physics and Materials Science, Faculty of Science, Chiang Mai University, | ||
| + | Chiang Mai 50200, Thailand; | ||
| + | 8.Thailand Center of Excellence in Physics, Commission on Higher Education, 328 Si Ayutthaya Road, Bangkok 10400, Thailand | ||
==References== | ==References== | ||
Revision as of 01:30, 23 May 2014
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Contents
Annotated Information
Function
SPINDLY(SPY) encodes an O-linked N-acetylglucosamine transferase that is considered to be a negative regulator of gibberellin (GA) signaling through an unknown mechanism(Jacobsen and Olszewski,1993; Jacobsenet al., 1996;Swain et al., 2001).Shimada et al(2006) isolated a rice SPINDLY homolog (OsSPY) and produced knockdown transgenic plants in which OsSPY expression was reduced by introducing its antisense or RNAi construct;they find that in knockdown plants, the enhanced elongation of lower internodes was correlated with decreased levels of OsSPY expression, similar to the spindly phenotype of Arabidopsis spy mutants,The suppression of OsSPY function in a GA‐insensitive mutant, gid2, also caused an increase in the phosphorylation of a rice DELLA protein, SLR1, but did not change the amount of SLR1.suggest that OsSPY functions as a negative factor in GA signaling in rice; OsSPY in GA signaling is not via changes in the amount or stability of SLR1, but probably involves control of the suppressive function of SLR1;and OsSPY may play roles both in GA signaling and in the brassinosteroid pathway.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
1.Bioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan; 2.Field Production Science Center, University of Tokyo, Nishi-Tokyo, Tokyo 188-0002, Japan; 3.RIKEN (The Institute of Physical and Chemical Research), Wako-shi, Saitama 351-0198, Japan; 4.Department of Chemistry, Joetsu University of Education, Joetsu-shi, Niigata 943-8512, Japan; 5.Science and Technology Research Institute, Chiang Mai University, Chiang Mai 50200, Thailand; 6.Molecular Biology Laboratory, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; 7.Plasma and Beam Physics Research Facility, Department of Physics and Materials Science, Faculty of Science, Chiang Mai University,
Chiang Mai 50200, Thailand;
8.Thailand Center of Excellence in Physics, Commission on Higher Education, 328 Si Ayutthaya Road, Bangkok 10400, Thailand
References
Jacobsen, S.E. and Olszewski, N.E.(1993) Mutations at theS PINDLY locus of Arabidopsisalter gibberellin signal transduction.Plant Cell, 5, 887–896. Jacobsen, S.E., Binkowski, K.A. and Olszewski, N.E.(1996) SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis. Proc. Natl Acad. Sci. USA, 93, 9292–9296. Swain, S.M., Tseng, T.-S. and Olszewski, N.E. (2001) Altered expression ofSPINDLYaffects gibberellin response and plant development.Plant Physiol.126, 1174–1185. Thornton, T.M., Swain, S.M. and Olszewski, N.E.(1999) Gibberellin signal transduction presents…the SPY who O-GlcNAc’d me.Trends Plant Sci.4, 424–428.
Structured Information
| Gene Name |
Os08g0559300 |
|---|---|
| Description |
Similar to Gibberellin action negative regulator SPY |
| Version |
NM_001069036.1 GI:115477810 GeneID:4346315 |
| Length |
7732 bp |
| Definition |
Oryza sativa Japonica Group Os08g0559300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:28079564..28087295 |
| Sequence Coding Region |
28080313..28080681,28081406..28081567,28081662..28081837,28081928..28082003,28082401..28082529 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:28079564..28087295 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:28079564..28087295 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggggcgaccggggatggactccagcgaagggagggagagcaatggcgttgttcctgaacgtaatggtggtgctgtccctgcaaaacagcagttggacgggaaggacaccttgcggtacgccaacatcctccgctcccgcaacaaatttgccgaagcactccagttgtacaataatgtccttgagaaggatgaagccaatgtggaggcccttattggcaaagggatttgcctccaggcacagagcctacctatgcaggccatcgagtgcttcaacgaggccgtcaggatcgacccagggaatgcatgtgctctcacttattgtgggatgatatacaaagatgagggtcacttagttgaagctgcagaggcttatcaaaaagctcgaaatgcagatccttcctacaaacctgctgcagagtttcttgctattgtgttgaccgatcttggaactagcttgaagcttgcaggtaatacagaggaggggattcaaaaatattgtgaagctttggaagttgacagccactatgcgcctgcttattacaaccttggtgtggtttactcggagatgatgcaatttgatttggctcttacttgttacgagaaagctgctttggagaggccattgtatgctgaagcttattgcaacatgggagttatttacaagaatcgtggagaattagaagcagcaattgcctgctacgagaggtgcttgactatttccccaaattttgagattgccaagaataacatggcaatagcactaaccgacttgggtacaaaggtaaaaattgagggtgacattaatcaaggtgtggcatattacaagaaagctctgttctacaattggcactacgctgatgccatgtataatcttggtgtcgcatatggtgaaatgttgaattttgagatggctattgttttttacgagcttgctctgcacttcaatcctcgctgtgcggaggcatgcaacaacctgggagtaatatacaaggacagggataatcttgacaaagctgttgaatgttatcaaatggccttgtcaattaagccaaatttctctcagtcattgaataaccttggagttgtctacactgtccagggaaagatggatgctgcttcaagcatgattcagaaggccatatttgcaaattccacgtatgctgaagcatataataacttgggtgttctttacagagatgcaggaagtattacttcagccgtacaagcttatgagaaatgccttcaaattgatcctgattcacgaaatgctggtcagaatcgtttgcttgcgttgaattatattgatgagggctttgacgacaagctttatcaagctcacagggagtggggaaaacgcttcctgaaattgtatccacagtatactagttgggataacccaaaagtcgctgatcgtcctctggtcattggctatgtgtctcctgattactttactcactctgtgtcatacttcattgaagctccccttgcacaccatgactactcaaattacaaggtggttgtgtattctggtgttgtgaaggcagatgccaagacccttcgattcaaggataaggtattaaaaaagggtgggttgtggagagatatatatggtattgatgaaaagaaggttgctagcttggtaagagaggacaaagtggatatacttgtggaacttactggtcatacggcaaataacaagttaggaacaatggcatgcaggcctgctcctattcaggttacatggattggctaccctaatacaacaggtctgccaacaattgactacagaataacagattcattggctgacccacctgatacaacccaaaagcatgttgaagagttggtgcgccttcctgaaagctttctttgttacagtccttccccagaagctgggccagtttgtcccactccagcaattttaaatggtttcatcacgtttgggagttttaataatctagcaaagattacaccaaaagtattgcaagtttgggccaaaattttgtgtgcagtccctaactcccgtcttgtggttaagtgtaagccattctgctgcgacagtattagacagaaattcctatcaacactagcagaattgggtttggagccgttacgagttgacttgctgccactcatccatctcaaccatgatcacatgcaagcatattccctaatggacataagcctggatacgtttccatatgctggaactactactacatgtgaatctctatacatgggggttccatgtgttactatggctggctcagtccatgctcataatgttggtgttagtctactcactaaagttgggctggggaggctggttgcgaagtctgagaatgaatatgttagcttagcattggatttagcggcagatgttactgccttgcaagaactgagaatgagcctccgagggctgatggcgaaatcaccagtgtgtgatggagagaatttcacacgtggtctggaatctgcatacagaaacatgtggcgcagatactgtgatggggatgcacctgccctcaggcggttggatctgttacaggaagagccatgctccaataacaataagcaagattttgatgacaatcaggtcgcaaagctcgcagatctgaaagcacagagagtggatgccgcggtagatggagacaagcaatcccagttaacagcgcatgctgcagtagtaggggaagttcagcaggccccaataatggtgaatggtgtgagttcacctgtctcttctgggaaagttgaagcaaatgggcacataagccggtga</cdnaseq> |
| Protein Sequence |
<aaseq>MGRPGMDSSEGRESNGVVPERNGGAVPAKQQLDGKDTLRYANIL RSRNKFAEALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNA CALTYCGMIYKDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTE EGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMG VIYKNRGELEAAIACYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYK KALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRD NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYN NLGVLYRDAGSITSAVQAYEKCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHREW GKRFLKLYPQYTSWDNPKVADRPLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVV YSGVVKADAKTLRFKDKVLKKGGLWRDIYGIDEKKVASLVREDKVDILVELTGHTANN KLGTMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQKHVEELVRLPESFL CYSPSPEAGPVCPTPAILNGFITFGSFNNLAKITPKVLQVWAKILCAVPNSRLVVKCK PFCCDSIRQKFLSTLAELGLEPLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTT TCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKSENEYVSLALDLAADVTAL QELRMSLRGLMAKSPVCDGENFTRGLESAYRNMWRRYCDGDAPALRRLDLLQEEPCSN NNKQDFDDNQVAKLADLKAQRVDAAVDGDKQSQLTAHAAVVGEVQQAPIMVNGVSSPV SSGKVEANGHISR</aaseq> |
| Gene Sequence |
<dnaseqindica>750..1118#1843..2004#2099..2274#2365..2440#2838..2966#3047..3166#3256..3322#3416..3499#3700..3794#4111..4175#4288..4486#5110..5304#5550..5644#5743..5878#5949..6166#6413..6540#6832..7301#aaagaagggaaaaaaaatacgaaaagcaaaaaggaataaacggagggggctaaacaccaaaattccccctctccttctccttcccctcctcccgaaaccctcgccgccgtcgctgtcgaaaccctcgctgctgctgctgccgcacggcgcggcggggtaccgggtccccctccctgcggcggcgcggaggggtaggtctcccccccctcgctgcggcgtggcggtggggggtgcggtgccggctgccgcgccatgatcttgcgccggtggactgcgcctatccaatgtgagctctcctcctacttccgccgcggcattagggttcttgcttcttgagctggaagagttctcttgcgttgcgaacgcctactgtttcctgcgaattcttagtgcttgttcttggattctttccgggggtgttcttaatctgttgtttgcaaaagttctttttttctttttttggctagggttttgaaatttgcaatcttggtgttcttttccctgagtttttactaaaaagctgcggcttttacgcaattcggtggtagtccaaagccgcgtcctttttttctagtctttacgcgcatttggctccaatttttctcctttttttagacgcgttttcttcacgctaatattcgcaactgaaatcttagacctaacgaaccattctaaaattgatgatcgttacattctttctgcagaaaaaaaaaagataaagatagaacaagtaggttactttccgtaccatggggcgaccggggatggactccagcgaagggagggagagcaatggcgttgttcctgaacgtaatggtggtgctgtccctgcaaaacagcagttggacgggaaggacaccttgcggtacgccaacatcctccgctcccgcaacaaatttgccgaagcactccagttgtacaataatgtccttgagaaggatgaagccaatgtggaggcccttattggcaaagggatttgcctccaggcacagagcctacctatgcaggccatcgagtgcttcaacgaggccgtcaggatcgacccagggaatgcatgtgctctcacttattgtgggatgatatacaaagatgagggtcacttagttgaagctgcagaggtatgcgtaagattcttcatgtggattccctgttcttactgttagcttattcgttattgtgaaatctgatagtttttctttttagtttgttgtcataaacactagaagtctcaaatgttgtatatgtggttctctgaaagcaaaatactcaaatgctgaagtaagtgcctcgcacagtcgcactccccaaaataccaggcaatgagacttgggacttaactgccaatttctgacttctgagggtactgcagacctatttttagcaccaagttatatcttgagtggtttgtgtccaagaactgtaactagaaaccaaaacaactagtttgataagttcttgatcaagcatactatgcaagagataaaactgtcgagataatcactcaagaattttccagcagaagattttttattatctccatgacatacttattagcaccgtaaaattttgtgcgtagctggtggatagaatgacatgtgaatgagctaaggctcagctagagctgcaaaaagagtaatacttttgccccttggagaatagtggtccctattaattggcagggttgtaaaaatcctaagttcctaaccaatctaacatataagatcaaaacagttggtcagtccaaaaattctctcggaaaagcttggaatttcgacattgtttctgtatttattatgtgatatatttatccataaatgttctgatggagagaaattgtaacaggcttatcaaaaagctcgaaatgcagatccttcctacaaacctgctgcagagtttcttgctattgtgttgaccgatcttggaactagcttgaagcttgcaggtaatacagaggaggggattcaaaaatattgtgaagctttggaagttgacagccactatgcggtaccatcaccagctataatttatatctagatctctattattttgtttttgttatccatttaagttttttaatgtgttcatctgattaatgtagcctgcttattacaaccttggtgtggtttactcggagatgatgcaatttgatttggctcttacttgttacgagaaagctgctttggagaggccattgtatgctgaagcttattgcaacatgggagttatttacaagaatcgtggagaattagaagcagcaattgcctgctacgagaggtaagctttattttttctgctcatacaaattatgctgattcccaaagtactgttgaaaactaatgttgacttatctttactgtatcccaggtgcttgactatttccccaaattttgagattgccaagaataacatggcaatagcactaaccgacttgggtacaaaggtgtggtcttgctaccttttgtttcaaccaaatcaacacattgcttcttgtggtgtcctgcatgtcaatcataatggttgccatcacttgcccatcatattagcagtcatgcgtgacaggcttgaactaagactagtgttgatttgaaaattgtctcaatcatgtgggttaatgaggaaacatcatgataactctatgttttttcgttgcttgtccgctcactttttactctgagcatagcaactctggcaatataattaattttgactaaccttagaatgaatcatatgaaatagacctttttaatttatactttggtatacctttaagaattgttaactctggcatttggtggtgatttttgtatttttctcttatcaattgacatttttcacaggtaaaaattgagggtgacattaatcaaggtgtggcatattacaagaaagctctgttctacaattggcactacgctgatgccatgtataatcttggtgtcgcatatggtgaaatgttgaattttgagatggtcagtcataagaaaaaaatctttaatattctgtacataatgtcctctcttttgctgacactcttttctgttttccaaaggctattgttttttacgagcttgctctgcacttcaatcctcgctgtgcggaggcatgcaacaacctgggagtaatatacaaggacagggataatcttgacaaagctgttgaatgttatcaagtaagtggaactaattatgcagtatgcaatatctgcagatagtcacaagtatcacaacagattattcattatcttctattctgttgtagatggccttgtcaattaagccaaatttctctcagtcattgaataaccttggagttgtctacactgtccaggcatgctcctctgctagtcttgcacaatttctattgggattggatgattgtatcatgttttagcttattgaatatgttgttcttcatatatagggaaagatggatgctgcttcaagcatgattcagaaggccatatttgcaaattccacgtatgctgaagcatataataacttgggtaatgtttaaccaaccaacatcatgagagcctcttaaattctgccatgtaatttgaaacagcattttccagctgagactcataacaactatataagcactaatcagtaattcatttcattgctttgcataattctctttttgatagctggaatgagactttaatacgtaactgacaatccatcactgctttcaccataggtgttctttacagagatgcaggaagtattacttcagccgtacaagcttatgagaaatgccttcaaattgatcctgattcacgaaatgctggtcaggtactttctttgtcctaagcttgctaattaaaacttgtgtaatctttctgtgttgcatggagaattaaatttatttaagcaggtacagctaataattatacttatccatttagtagcaaactgggaagcatataaatgtttcttccttgtataaatagacaaatacttgtctattgcatgttcataatttgttccaaccttgatgttgcttgcccacggtatctgttttgctgctttttaaaaaaaaatatatatttgtggaatagctatggtttatatttgtaacattcaacttacgatatagcttgttctgcagaatcgtttgcttgcgttgaattatattgatgagggctttgacgacaagctttatcaagctcacaggtcatttagcactttttcacaatatacagtcatatttatgttagattgttttttctgtttttatgtgttagaaattctcaactatatattcactgtattttatattttgcagggagtggggaaaacgcttcctgaaattgtatccacagtatactagttgggataacccaaaagtcgctgatcgtcctctggtcattggctatgtgtctcctgattactttactcactctgtgtcatacttcattgaagctccccttgcacaccatgactactcaaattacaaggtggttgtgtattctggtgttgtgaaggtagatatagccgttccttttcttgtctctattttcctgcattttcacattgtgtcccaaaaaacttgtttagactgtcttgcctcattaagatttaaaatatatatggaaataatttatgcaaaaatattccttttgaaaacagaaatggtagttcaatggtcaataggatagtgaactgtaattatttttcaagataggcctctagactatgtccagtttcaggattaccactttattattgcctagactgaaatgttttaaatagtgggctaagacatttagtggttagccttctcaaacagctatagctatagcggctaaattgtacataagagcaaatatttagctagacccttctcaaacagctatagccggagatttaaaatgcatatcctgaaaccccccaagaaagattatcccagtaacagcgaatatataattggaaatcatccaaggtggctgacaactcggggccatttatttgtgacatatcagttattttccaacttgcatgtttcactacttgtacaaagaaattaggcccaatttatctgcaatgtgttcgagtacctgttttaatcacagttcattcatgttttcttcaattgaaaattatttaggcagatgccaagacccttcgattcaaggataaggtattaaaaaagggtgggttgtggagagatatatatggtattgatgaaaagaaggttgctagcttggtaagagaggacaaagtggatatacttgtggaacttactggtcatacggcaaataacaagttaggaacaatggcatgcaggcctgctcctattcaggtacctttgtgcccatgattcataactgtcacgttacctaatttcagaactatttggacagaagtgatatcatcagatcattatgttctgaaaccagcttcttctgatcttgctaacatgattgcttccttttcactctagtcaatgaaactattcaagtgtctaataataaatgattatctgactattctactatgtgattagtgaactgacaggggcttcttttacttgaattgcctgcacaggttacatggattggctaccctaatacaacaggtctgccaacaattgactacagaataacagattcattggctgacccacctgatacaacccaaaagtaagacatctgcttttcttgcggtgatagctttctggcatgcacttttatacccacacatctagaacgtgacggtgacaattatgaattatctgcaggcatgttgaagagttggtgcgccttcctgaaagctttctttgttacagtccttccccagaagctgggccagtttgtcccactccagcaattttaaatggtttcatcacgtttgggagttttaataatctagcaaaggtgacacataaaacttgagtaatcagttcatttttactggatcactatttattgatttttcttttggcagattacaccaaaagtattgcaagtttgggccaaaattttgtgtgcagtccctaactcccgtcttgtggttaagtgtaagccattctgctgcgacagtattagacagaaattcctatcaacactagcagaattgggtttggagccgttacgagttgacttgctgccactcatccatctcaaccatgatcacatgcaagcatattccctaatggacataaggtcagttatttagatacttcctccgtttcatattataagactttctagcattgtccacattcatatagatgttgtgtctagatttattaacatctatgtgaatgtggacaatgctagaaagtcttataatatgaaacggagggagtacatcttttatcctatgtttaaacatgttatgtaaacgagtagatccattctactgcattgtatcttaaattgtctgaactttggttggttcctttgcagcctggatacgtttccatatgctggaactactactacatgtgaatctctatacatgggggttccatgtgttactatggctggctcagtccatgctcataatgttggtgttagtctactcactaaagttggtacgtgtctatttactctgtggtgtatgtagcaatagatcgaattgctgtacagttttattttcatgctatttgttgatcgacttgttttcttcttttgcatcgccatgtgaagactcggaaaaaaaatcactattgtgctgtctggttttgagttttgatacatataacttgatgattggagcaggaattctagctattgaatctgacctttctttacacagttgaatcaggtcgggtatatgttctccttgccgaattgttggttgacatttactgttattcttgcagggctggggaggctggttgcgaagtctgagaatgaatatgttagcttagcattggatttagcggcagatgttactgccttgcaagaactgagaatgagcctccgagggctgatggcgaaatcaccagtgtgtgatggagagaatttcacacgtggtctggaatctgcatacagaaacatgtggcgcagatactgtgatggggatgcacctgccctcaggcggttggatctgttacaggaagagccatgctccaataacaataagcaagattttgatgacaatcaggtcgcaaagctcgcagatctgaaagcacagagagtggatgccgcggtagatggagacaagcaatcccagttaacagcgcatgctgcagtagtaggggaagttcagcaggccccaataatggtgaatggtgtgagttcacctgtctcttctgggaaagttgaagcaaatgggcacataagccggtgaccaaggggagtcgagcatactccattgatgtgggaaacactgacccactgtagcttgagatgcaccattgctgtggtggacatttgttcttacagaattcgacgctttgcaggcctacactgggtgtctcatttgtctgacacccacaatggataagaaagaagagcacttctgtgccatccgacggtgatttctctggttacactttgacctttgtagcaaatgtaagattgatgggggatatgcttatagagtttgatttgtagaggtataccccctgtgtaggtttatgaacatgatggcttcagttgccatatgttagaagaaacagagaaagaggaggaagcccttgttgtaaatgcagaaaaaacagaactgaaaaactactagaatcaattgacggcggcatttcaacaggctgtgtcatgatg</dnaseqindica> |
| External Link(s) |
