Difference between revisions of "Os04g0469800"
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==Labs working on this gene== | ==Labs working on this gene== | ||
| − | 1.Fukui Prefectural University, Yoshida, Niigata, Japan | + | 1.Fukui Prefectural University, Yoshida, Niigata, Japan |
| − | 2.Kobe University, Kōbe-shi, Hyogo-ken, Japan | + | |
| + | 2.Kobe University, Kōbe-shi, Hyogo-ken, Japan | ||
| + | |||
3.Institute of Physical and Chemical Research | 3.Institute of Physical and Chemical Research | ||
| + | |||
4.The University of Tokyo, Japan | 4.The University of Tokyo, Japan | ||
| − | 5.Kyushu University, Hukuoka, Fukuoka, Japan | + | |
| + | 5.Kyushu University, Hukuoka, Fukuoka, Japan | ||
| + | |||
6.The American Society of Plant Biologist | 6.The American Society of Plant Biologist | ||
| + | |||
7.Japan Society for Bioscience, Biotechnology and Agrochemistry | 7.Japan Society for Bioscience, Biotechnology and Agrochemistry | ||
| + | |||
8.The Japanese Society of Plant Physiologist | 8.The Japanese Society of Plant Physiologist | ||
Revision as of 04:32, 23 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Associated with the biological synthesis of BRs in rice, its recessive mutations can lead to the disturbance of the biological synthesis of BRs as well as plant dwarf.
Expression
Plants dwarf,the upper second internode has little elongation; Leaf Angle does obviously not extend.Leaves become stiff; Neck of spike is longer than it of wide type; Grain is small and round; The mutant were characterized by shortened hypocotyl in in the dark,which means skotomorphogenesis exist with flaws; The expression of dll may recover with the help of exogenous BRs.
Evolution
The total length of D11 cDNA is 2031bp,including 9 exons，which codes 480 amino acid. A base C deleted in the second exon ind11-l, A base G insert in the seventh exon in d11-2; A slicing error results from the last base G-T of the third intron in d11-4; All above there ways lead to the frameshift mutation,and no protein making; d11-3 is the forth exon's single-base substitution mutation"ACC→ATC", threonine into isoleucine, which leads to the loss of function, and the dwarf symptom is light. The production of DLL is a key enzyme of the progress of biosynthesis of BRs, what's more, it may catalyze the biosynthesis of 6-DeoxoTY and TY.
Labs working on this gene
1.Fukui Prefectural University, Yoshida, Niigata, Japan
2.Kobe University, Kōbe-shi, Hyogo-ken, Japan
3.Institute of Physical and Chemical Research
4.The University of Tokyo, Japan
5.Kyushu University, Hukuoka, Fukuoka, Japan
6.The American Society of Plant Biologist
7.Japan Society for Bioscience, Biotechnology and Agrochemistry
8.The Japanese Society of Plant Physiologist
References
1. Sumiyo Tanabe;Motoyuki Ashikari;Shozo Fujioka;Suguru Takatsuto;Shigeo Yoshida;Masahiro Yano;Atsushi Yoshimura;Hidemi Kitano;Makoto Matsuoka;Yukiko Fujisawa;Hisaharu Kato;and Yukimoto Iwasaki
A Novel Cytochrome P450 Is Implicated in Brassinosteroid Biosynthesis via the Characterization of a Rice Dwarf Mutant, dwarf11, with Reduced Seed Length The Plant Cell, 2005, 17(3): 776-790
Structured Information
| Gene Name |
Os04g0469800 |
|---|---|
| Description |
Cytochrome P450 724B1 (EC 1.14.-.-) (OsDWARF11) (Dwarf protein 11) |
| Version |
NM_001059582.1 GI:115458893 GeneID:4336116 |
| Length |
4426 bp |
| Definition |
Oryza sativa Japonica Group Os04g0469800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:23865707..23870132 |
| Sequence Coding Region |
23866060..23866159,23866823..23866947,23867405..23867511,23867698..23867776,23868066..23868152 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:23865707..23870132 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:23865707..23870132 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggtgggaggagagcttgtgctggctgctctggtgatcctgcttgctttgctgctgaccctggtgctgagccacttcctgcctttgctcctgaatcccaaggctcccaagggaagctttgggtggcctctccttggtgagacgctgaggttcctcagtcctcatgctagcaacaccctgggcagcttcctggaggatcactgctccaggtatgggagggtgtttaagtcccatctgttctgcacccccaccatagtgtcctgtgaccaggagctgaaccacttcatccttcagaatgaggagaggctgtttcagtgcagctaccccaggccaattcatggcattctgggcaagtcctccatgttagtggtcctaggggaggaccacaagaggctcaggaaccttgctctagcactggtcacctccacaaagctcaagcccagctaccttggcgacattgagaagattgcactgcatatagttgggtcatggcatggcaagagcaaggacaaggggatggtcaatgtcatcgccttctgcgaggaggcaagaaagtttgcattcagtgtaatagtgaagcaggtgctggggctatcaccagaggagccggtcactgccatgatacttgaagatttcctcgccttcatgaagggtctcatctctttccctctctacatcccagggacgccctatgccaaagctgtgcaggccagagcgaggatatcaagcactgtgaagggtattattgaggagaggaggaatgctggctccagcaacaagggtgatttccttgatgtgctgctttcaagcaatgagctctctgatgaggagaaagtgagctttgtgctggattccttactgggaggatatgagaccacctcactcttgatctccatggttgtgtatttccttgggcagtcagctcaagatctggaactagtgaagagggagcatgaaggcataagatcgaagaaagagaaggacgagttcttgagctctgaagactataagaagatggaatatacccaacatgttatcaatgaggcactgagatgtggcaacattgtcaagtttgtccacaggaaggctctcaaagatgtcagatacaaagagtatctgattccttctggttggaaggtcctacctgttttcagtgctgttcatttgaaccccttacttcatggaaatgcccaacaatttcagccctgcagatgggagggtgcaagccaagggacaagcaagaagtttacgccgttcggcggtggcccccggctctgccctggatcagagcttgcaaaagtagaggctgctttcttcctccatcaccttgtgctcaattatagatggagaatcgatggcgatgacattccgatggcatacccgtacgtggagttccagagaggtctgcccatagaaatcgagccactttgctctgaatcctga</cdnaseq> |
| Protein Sequence |
<aaseq>MVGGELVLAALVILLALLLTLVLSHFLPLLLNPKAPKGSFGWPL LGETLRFLSPHASNTLGSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEER LFQCSYPRPIHGILGKSSMLVVLGEDHKRLRNLALALVTSTKLKPSYLGDIEKIALHI VGSWHGKSKDKGMVNVIAFCEEARKFAFSVIVKQVLGLSPEEPVTAMILEDFLAFMKG LISFPLYIPGTPYAKAVQARARISSTVKGIIEERRNAGSSNKGDFLDVLLSSNELSDE EKVSFVLDSLLGGYETTSLLISMVVYFLGQSAQDLELVKREHEGIRSKKEKDEFLSSE DYKKMEYTQHVINEALRCGNIVKFVHRKALKDVRYKEYLIPSGWKVLPVFSAVHLNPL LHGNAQQFQPCRWEGASQGTSKKFTPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRWR IDGDDIPMAYPYVEFQRGLPIEIEPLCSES</aaseq> |
| Gene Sequence |
<dnaseqindica>3974..4073#3186..3310#2622..2728#2357..2435#1981..2067#1644..1878#1370..1524#795..1140#229..437#agagaaaaatagagggagggagagggagagaagcagagtgttgagcacaagctagtgaaagggttagatagaaacttggtagaatagacagataggcagagagagagagagagcttagcaagctaaggcttagctgctgcaaggctccatccatgcttcttgttgtgagatgagattgagataagatgagcagggggtggtggtgcctggtgtgaggctataggtaagatggtgggaggagagcttgtgctggctgctctggtgatcctgcttgctttgctgctgaccctggtgctgagccacttcctgcctttgctcctgaatcccaaggctcccaagggaagctttgggtggcctctccttggtgagacgctgaggttcctcagtcctcatgctagcaacaccctgggcagcttcctggaggatcactgctccaggtaaattaaaatcatatgcagtaaacatttctatcagtatcaccaccacaaccacacaggagcaacaagtgtcatcttaccatgcaattaagtactgtaccattatttcatgtgacagcacaaggtaatgctgctgtcctgtcccagcagctttatcacgcccttttttttcctccctgatgaggggggtgctgtaacatgaattggacagtgtttagcatcttgttaaagagttgtgcaaaccttttcttccgatgaacaagcgagagaaaaggaatgtaaaggttgcacaacacttaactagctagcatgcatggtggtagtaacactgatgatggtgtgatgatgatgatgcaggtatgggagggtgtttaagtcccatctgttctgcacccccaccatagtgtcctgtgaccaggagctgaaccacttcatccttcagaatgaggagaggctgtttcagtgcagctaccccaggccaattcatggcattctgggcaagtcctccatgttagtggtcctaggggaggaccacaagaggctcaggaaccttgctctagcactggtcacctccacaaagctcaagcccagctaccttggcgacattgagaagattgcactgcatatagttgggtcatggcatggcaagagcaaggacaaggggatggtcaatgtcatcgccttctgcgaggaggcaagaaaggttagcaagtgtactaacttgaaaccagagccatatcaccacaaggacatgatcccttgaaacaagggagggaaaactttgcacatgttagctacataccatcatcatcatgttgttacttgctgctgcatgaatctttgtcccaaggtcactttgacttaccatggtcttttttaccttttctttttttttctctctctggtgtgctctctttccttgagaaccacagtttgcattcagtgtaatagtgaagcaggtgctggggctatcaccagaggagccggtcactgccatgatacttgaagatttcctcgccttcatgaagggtctcatctctttccctctctacatcccagggacgccctatgccaaagctgtgcaggcatgcaactcaacatctcatttacacaagtcgttaaactgtcaataaaattttcaggccattttatttttgtatacttaccataataacttcatccttttgtccgcgaatcctcacaggccagagcgaggatatcaagcactgtgaagggtattattgaggagaggaggaatgctggctccagcaacaagggtgatttccttgatgtgctgctttcaagcaatgagctctctgatgaggagaaagtgagctttgtgctggattccttactgggaggatatgagaccacctcactcttgatctccatggttgtgtatttccttgggcagtcagctcaagatctggaactagtgaaggtatacagacttctcatgctgaaaaagacagagcagtactggtaaataagtacttaattaagtggccatcaataaaatatatattaacatgtttgcatgcagagggagcatgaaggcataagatcgaagaaagagaaggacgagttcttgagctctgaagactataagaagatggaatatacccaacatgtaagatgatcgttcaatacatgctttaggattagttagtaagccaggggtacctttttttcctattatcagcaactacacaaatatgtgaccctccgaatatgaggtttactcatattcagaacgattctcctatgcctacccatatatgcaatttttgaattaagcaaaaaaaagaaaaagaaacagagagagaaagaatctcattacaatagagtgaaaagggcggaagggacatgttcttcaataatggaaactgtatgatgatgcatatgctatgcccttacaggttatcaatgaggcactgagatgtggcaacattgtcaagtttgtccacaggaaggctctcaaagatgtcagatacaaaggtaattaaccctacttgaggctttccttgaagattccattgtgctcatcacatgataatggatcaggcaaagtggatggttgcacctttattactgatttttaagcattgttattcctaaaatacctcagcttttcatagaagatgctcaaaagcaagtggctcttttttctttgctctgttgcagagtatctgattccttctggttggaaggtcctacctgttttcagtgctgttcatttgaaccccttacttcatggaaatgcccaacaatttcagccctgcagatgggaggtacgtttgtttccataatctgtgaatgctccgcaatacttactaaatgtttattgttaatgacctaatgaaaaatgttttggaccagctaggccacgaagcttagctttcacgtagtatacttttctataatacaaatttataaaatgaaaagttcagagcacctatcaagagagcttatctggagccttgaaagaatcttctttaaagggtgttctctaactaattgctacctttaattagtgagcgcccaactatgacataattactcgcaactattctggtgtcttcagatgccaaacaagctccctgtggctgcaatgccttttgtgcatggtcctaaccatgattcctctcattcaaagccagcattcttggctttgcttccttttcttagtttctgtgatgaagctaatggtctgattcatgtgtgttcctaatctgattgatgcaacagggtgcaagccaagggacaagcaagaagtttacgccgttcggcggtggcccccggctctgccctggatcagagcttgcaaaagtagaggctgctttcttcctccatcaccttgtgctcaattataggtaaaacaaaagggtatatttgtcctacccgagtagaagatgcatggatcaaagttgactggcttaaacagcaatgaacaaaatacgttcagaagtaatatttaagaagctggtgcagagtagttggtgtttaaataggccatagaaaactgttgaggcaaacatgaacaggaaaacatactgatgcagttaccactctcatactgataatacacactacactagaccactagtaagtaatggcaagaaggccatgacagcaactaggcaaattatttatgcttttgtctgtaaggaccgcaagtctgaactcagctatcttgtgcattttcataagtggcactgtagagcatagaatcagacgacaacacacagaacaaacatgacagcatggagttttcgataggtaggctatgcaagttgagttgagggctgccatacaagataaaatatactaccacgatatgatcaaactcttttttttaaaaaaaaaactaggttcattagcaacaatctatacgtgacaactgacaagaacaggcagatttatgtaaattatgcggttgtttcagagtagagtctacatgtacttactgaatatccatgccagagaaaggctgatcatcgttcttcgtttctttcgtttcttgaaaacctgtgcagatggagaatcgatggcgatgacattccgatggcatacccgtacgtggagttccagagaggtctgcccatagaaatcgagccactttgctctgaatcctgacaggtttgcagttgcagccacggtgagcgagttcatcaaatcatccccgcaagcgagggggagatgcgggcgagaacgacggactgagaggattagtcagtgaaacaaaaaaaaggagagaaaatatttcaagaactgaagaatgcactgagcattagctagtagtacctatcaatgagccaagctgagattgtaatttgctgtacatggtgtagatatattttgtccatgccgattgcttgcggtggtggtggtgcggtgcttcaccctgtaacatcctccactgtttcaactttcatctgctattctatagaagaaaaaaaaaagaagaaaattgggctattgggctattg</dnaseqindica> |
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