Difference between revisions of "Os02g0728001"

From RiceWiki
Jump to: navigation, search
Line 1: Line 1:
−
The Basic Leucine Zipper Domain (bZIP domain) is found in many DNA binding eukaryotic proteins. One part of the domain contains a region that mediates sequence specific DNA binding properties and the leucine zipper that is required to hold together (dimerize) two DNA binding regions. The DNA binding region comprises a number of basic amino acids such as arginine and lysine. Proteins containing this domain are transcription factors.[1][2]
+
Please input one-sentence summary here.
−
bZIP transcription factor
 
−
[[File:001.jpg]]
 
  
−
CREB.png
+
==Annotated Information==
−
CREB (top) is a transcription factor capable of binding DNA via the bZIP domain (bottom) and regulating gene expression.
+
===Function===
−
bZIP transcription factors are found in all organisms. A recent evolutionary study revealed that 4 bZIP genes were encoded by the genome of the most recent common ancestor of all plants.[3] Interactions between bZIP transcription factors play important roles in cancer development[4] in epithelial tissues, steroid hormone synthesis by cells of endocrine tissues,[5] factors affecting reproductive functions,[6] and several other phenomena that affect human health.
+
Please input function information here.
  
−
1.Jump up ^ Ellenberger T (1994). "Getting a grip in DNA recognition: structures of the basic region leucine zipper, and the basic region helix-loop-helix DNA-binding domains.". Curr. Opin. Struct. Biol. 4 (1): 12–21. doi:10.1016/S0959-440X(94)90054-X.
+
===Expression===
−
2.Jump up ^ Hurst HC (1995). "Transcription factors 1: bZIP proteins". Protein Profile 2 (2): 101–68. PMID 7780801.
+
Please input expression information here.
−
3.Jump up ^ Corrêa LGG, Riaño-Pachón DM, Schrago CG, dos Santos RV, Mueller-Roeber B, Vincentz M. (2008). "The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes". In Shiu, Shin-Han. PLoS ONE 3 (8): e2944. doi:10.1371/journal.pone.0002944. PMC 2492810. PMID 18698409.
+
 
−
4.Jump up ^ Vlahopoulos SA, Logotheti S, Mikas D, Giarika A, Gorgoulis V, Zoumpourlis V (April 2008). "The role of ATF-2 in oncogenesis". BioEssays 30 (4): 314–27. doi:10.1002/bies.20734. PMID 18348191.
+
===Evolution===
−
5.Jump up ^ Manna PR, Dyson MT, Eubank DW, Clark BJ, Lalli E, Sassone-Corsi P, Zeleznik AJ, Stocco DM (January 2002). "Regulation of steroidogenesis and the steroidogenic acute regulatory protein by a member of the cAMP response-element binding protein family". Mol. Endocrinol. 16 (1): 184–99. doi:10.1210/me.16.1.184. PMID 11773448.
+
Please input evolution information here.
−
6.Jump up ^ Hoare S, Copland JA, Wood TG, Jeng YJ, Izban MG, Soloff MS (May 1999). "Identification of a GABP alpha/beta binding site involved in the induction of oxytocin receptor gene expression in human breast cells, potentiation by c-Fos/c-Jun". Endocrinology 140 (5): 2268–79. doi:10.1210/en.140.5.2268. PMID 10218980.
+
 
 +
You can also add sub-section(s) at will.
 +
 
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 
 +
==References==
 +
Please input cited references here.
 +
 
 +
==Structured Information==
 +
{{IndicaGene|
 +
GeneName = BGIOSGA000114|
 +
Description = Pyrroline-5-carboxylate reductase|
 +
Definition = Oryza sativa Indica Group BGIOSGA000114, complete gene.|
 +
tag = |
 +
tid = BGIOSGA000114-TA|
 +
pid = BGIOSGA000114-PA|
 +
Length = 2199|
 +
Source = Oryza sativa Indica Group
 +
 
 +
  ORGANISM  Oryza sativa Indica Group
 +
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 +
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 +
            clade; Ehrhartoideae; Oryzeae; Oryza.
 +
|
 +
Chromosome = [[:category:Indica Chromosome 1|Chromosome 1]]|
 +
AP = Chromosome 1:45755073..45757271|
 +
CDS = 45757047..45757271,45756758..45756806,45756352..45756443,45756052..45756124,45755625..45755668<br>,45755073..45755261|
 +
GCID = <gbrowseImage1>
 +
name=IndicaChromosome01:45755073..45757271
 +
source=RiceIndica01
 +
preset=GeneLocation
 +
</gbrowseImage1>|
 +
GSID = <gbrowseImage2>
 +
name=IndicaChromosome01:45755073..45757271
 +
source=RiceIndica01
 +
preset=GeneLocation
 +
</gbrowseImage2>|
 +
CDNA = <cdnaseq>ATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTCGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAA</cdnaseq>|
 +
AA = <aaseq>MAAPPQPVPAPAAASPEVFRLGFIGPGNLAESIARGVAASGVLPATAIRTAPHRRPERAEAFSSIGAHILETNAQVVDDSDVIVISVKPQIVRQVLVELKPLLSEEKLLVSIAAGIKMEDLQGWSGHRRFIRVMPNTPSAVGQAASVMCLGEMATENDENRVLGAATMVNKTGKHPGQLKDMVTSPAGTTITGIQELEKGAFRGTLINAVVAATKRCRELSQS</aaseq>|
 +
DNA = <dnaseqindica>1..225#466..514#829..920#1148..1220#1604..1647#2011..2199#ATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTATCCTGGGCTGCTTTGGATTGCCACCAATTCCCACTAATTTTGAGTACCTTCAGTTGTACTTGTATGTTTGATTCAAGCCAGTACCTGTTGGAAATCCTACCAAAATTTGAATCCTAGCAAACTCTACCCTACCAAATGTTCTTCTATGCCATTTTTTTTCTTATGGCATGTAATTCAGTTCATTATCCATCACATTAGACAGCAAGTAACTCTTCTCTTGTTATTATCTTGTGATAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGGTATGTTGCATCTTGTCCTGTTTTCTCATCTTTGTACAACATCTGTTTTTTCCTATGTTTTCAGATTTCAGTTTATTGTTTTCGGAAGGAAGCATATTTTTAAAGGCAAAATTAGGAGAACTAGTTAGATTTTAGTGTACCGCTGCCACTTCAGGTGTTTTCTGATGTTCTGGAGATGTAAATGCTTTAGGGGAAAAAGTCAGTGATCAATTTCACAAATGTTCTCAGGATATTTGCTAGTGATGTATGGGTAACGTTTGAGACTTTGAGTAGGTTTTGCATGCTTATGAGATTACCTCTGCATCAAATTGCAGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGTGAATCTATATTTTTGTTTTACTCAATATCTTAACTCATGGCTTCTGGTGTGAAATATTGCTCTATCTACATTCCATGTAGAAGCAGCGAACTGTTGCACAATGCCTAATTGTGTGGATAACGTATGAGATAAAAACATCTTTATTCATGCCAGATCTTTTTTCCCTCAGTTGGAAACGTTCAGTTGTTCACAGTTTGGCCTATTTTCTTTTGATTGTAATTCCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGGTAACATATATGACAATCATCCATTAACTTTCATATGCTTGTTTCATGTGTACTTTGTGATAGATTTTGTGTTATGGTTGTCGGACTGAAAATCACATAATCTATTGGTAATCAACCTTTGTTGTAAAGTTATCTATCGACTAATATTGTGTGTCGATATCTCTTTCAGAATATCACTTTTTTTTAAGGAAGATATCACCTATTTTAGTGAACAACACTTTTATATAATCCTTCCAGGAGAAAAAAAGAACTACCATTATGTTAAGAGTTGGGTGGTAGAATTTTTGAAATGCAAATGCTCATACGTTTAGTAATTGAAATCGTAGTTTATCTTCTCAAAGAACTGAGAATTAATCAATTGCTGATCTCGTTGTATCTGCTAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGGTATGTGACTAATTTTACAGATCTTTTCTTGAAAAGCTTCACTGGAAACAATATGTTATGATTTTGAGAATAAACATGTATTCCCATCTATTTGAATACAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTGGTCTTCACTCGGGATCTTGCACTTGGTCTATGCATCTCAGACAGTGAGTGTGGCCTTCCATAAAGATATGTATGAGATATTGTTCTATGCTCTGGTCACATATTCTGTTGATCTATATAGGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTCGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAA</dnaseqindica>|
 +
Link = [http://plants.ensembl.org/Oryza_indica/Gene/Summary?g=BGIOSGA000114 EnsemblPlants:BGIOSGA000114]|
 +
}}
 +
[[Category:Genes]]
 +
[[Category:Indica mRNA]]
 +
[[Category:Oryza Sativa Indica Group]]
 +
[[Category:Indica Genes]]
 +
[[Category:Indica Chromosome 1]]
 +
[[Category:Chromosome 1]]

Revision as of 02:34, 6 June 2014

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA000114

Description

Pyrroline-5-carboxylate reductase

Definition

Oryza sativa Indica Group BGIOSGA000114, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA000114-TA

Ensembl Protein ID

BGIOSGA000114-PA

Length

2199

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:45755073..45757271

Sequence Coding Region

45757047..45757271,45756758..45756806,45756352..45756443,45756052..45756124,45755625..45755668
,45755073..45755261

Genome Context

<gbrowseImage1> name=IndicaChromosome01:45755073..45757271 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:45755073..45757271 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTCGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAA</cdnaseq>

Protein Sequence

<aaseq>MAAPPQPVPAPAAASPEVFRLGFIGPGNLAESIARGVAASGVLPATAIRTAPHRRPERAEAFSSIGAHILETNAQVVDDSDVIVISVKPQIVRQVLVELKPLLSEEKLLVSIAAGIKMEDLQGWSGHRRFIRVMPNTPSAVGQAASVMCLGEMATENDENRVLGAATMVNKTGKHPGQLKDMVTSPAGTTITGIQELEKGAFRGTLINAVVAATKRCRELSQS</aaseq>

Gene Sequence

<dnaseqindica>1..225#466..514#829..920#1148..1220#1604..1647#2011..2199#ATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTATCCTGGGCTGCTTTGGATTGCCACCAATTCCCACTAATTTTGAGTACCTTCAGTTGTACTTGTATGTTTGATTCAAGCCAGTACCTGTTGGAAATCCTACCAAAATTTGAATCCTAGCAAACTCTACCCTACCAAATGTTCTTCTATGCCATTTTTTTTCTTATGGCATGTAATTCAGTTCATTATCCATCACATTAGACAGCAAGTAACTCTTCTCTTGTTATTATCTTGTGATAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGGTATGTTGCATCTTGTCCTGTTTTCTCATCTTTGTACAACATCTGTTTTTTCCTATGTTTTCAGATTTCAGTTTATTGTTTTCGGAAGGAAGCATATTTTTAAAGGCAAAATTAGGAGAACTAGTTAGATTTTAGTGTACCGCTGCCACTTCAGGTGTTTTCTGATGTTCTGGAGATGTAAATGCTTTAGGGGAAAAAGTCAGTGATCAATTTCACAAATGTTCTCAGGATATTTGCTAGTGATGTATGGGTAACGTTTGAGACTTTGAGTAGGTTTTGCATGCTTATGAGATTACCTCTGCATCAAATTGCAGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGTGAATCTATATTTTTGTTTTACTCAATATCTTAACTCATGGCTTCTGGTGTGAAATATTGCTCTATCTACATTCCATGTAGAAGCAGCGAACTGTTGCACAATGCCTAATTGTGTGGATAACGTATGAGATAAAAACATCTTTATTCATGCCAGATCTTTTTTCCCTCAGTTGGAAACGTTCAGTTGTTCACAGTTTGGCCTATTTTCTTTTGATTGTAATTCCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGGTAACATATATGACAATCATCCATTAACTTTCATATGCTTGTTTCATGTGTACTTTGTGATAGATTTTGTGTTATGGTTGTCGGACTGAAAATCACATAATCTATTGGTAATCAACCTTTGTTGTAAAGTTATCTATCGACTAATATTGTGTGTCGATATCTCTTTCAGAATATCACTTTTTTTTAAGGAAGATATCACCTATTTTAGTGAACAACACTTTTATATAATCCTTCCAGGAGAAAAAAAGAACTACCATTATGTTAAGAGTTGGGTGGTAGAATTTTTGAAATGCAAATGCTCATACGTTTAGTAATTGAAATCGTAGTTTATCTTCTCAAAGAACTGAGAATTAATCAATTGCTGATCTCGTTGTATCTGCTAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGGTATGTGACTAATTTTACAGATCTTTTCTTGAAAAGCTTCACTGGAAACAATATGTTATGATTTTGAGAATAAACATGTATTCCCATCTATTTGAATACAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTGGTCTTCACTCGGGATCTTGCACTTGGTCTATGCATCTCAGACAGTGAGTGTGGCCTTCCATAAAGATATGTATGAGATATTGTTCTATGCTCTGGTCACATATTCTGTTGATCTATATAGGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTCGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000114

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0728001&oldid=178693"