Difference between revisions of "Os05g0277000"

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==Annotated Information==
 
==Annotated Information==
 
===Function===
 
===Function===
−
Please input function information here.
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May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence
 +
 
 +
By similarity.
 +
 
 +
Subcellular location: Secreted › cell wall
 +
 
 +
By similarity. Membrane; Peripheral membrane protein
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 +
By similarity.
 +
 
 +
Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.
 +
 
  
 
===Expression===
 
===Expression===
−
Please input expression information here.
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 +
    Protein name: Os05g0277000 protein
 +
   
 +
    Protein sequence:
 +
2HCZ_X      148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L      S    A.[1].WKPMKLSWGAIWRMD.[1]. 202
 +
query        156 IRFTISGR    DYFELVTVFNVGGSGVVAQVSIK.[2].K      T    D    WMAMSRNWGQNWQSN      206
 +
gi 20138021  157 VRFTMRGQ    GNFNMVMISNVGGGGSVRSVAVR    G      S.[2].K.[1].WLQMTRNWGANWQSS      208
 +
gi 20138096  162 MRFTINGR    NYFELVLISNVAGGGEISKVWIK    G      S.[2].N.[1].WETMSRNWGANYQSN      213
 +
gi 75244809  158 IRFTINGK    NYFELVLIANVGGSGVVSGAWIK    G      S.[2].Q    WMAMSRNWGMNWQSN      208
 +
gi 75223466  157 MRFTINGN    DYFELVTVANVGGSGVVSQMWIK    G      F.[2].D    WMVMSRNWGASWQSN      207
 +
gi 75263195  162 VKFAINGH    NYFELVNVFNVGGSGVVTGLWIK    G      S.[2].D    WLVMSRNWGANWQSN      212
 +
gi 75267715  164 VRFTINGR    NYFELLMISNVGGAGSVQSVQIK    G      S.[2].N    WMTMSRNWGANWQSN      214
 +
gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T    G.[1].WTPMRESWGSIWRLD      283
 +
gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G      A    G.[2].WTPMQQSWGAVWKLS      214
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 +
 
 +
2HCZ_X      203 A    KALKGPFSIRLTS.[3].KKVIAKDVIP 229
 +
query        207 A    YLNTQSLSFKVKL.[3].REVTVWNIAP 233
 +
gi 20138021  209 G    DLRGQRLSFKVTL.[3].KTQTFLNVVP 235
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gi 20138096  214 T    YLNGQSLSFKVQL.[3].SIKAALNVVP 240
 +
gi 75244809  209 A    YLTGQSLSFRVQT.[3].KVKTAYDVAP 235
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gi 75223466  208 A    YLNSQSISFRVQT.[3].RVITADNVAP 234
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gi 75263195  213 A    YLNGQGLSFRVQL.[3].RQVTATNVAP 239
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gi 75267715  215 A    YLNGQPLSFKVTT.[3].VTKTFLNAIS 241
 +
gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311
 +
gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242
 +
 
 +
 
 +
    NM_001061613.1 → NP_001055078.1  Os05g0277000 [Oryza sativa Japonica Group]
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 +
    See proteins identical to NP_001055078.1
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 +
    Status: PROVISIONAL
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 +
    UniProtKB/Swiss-Prot
 +
        P0C1Y4
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    UniProtKB/TrEMBL
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        Q0DJI1
 +
    Conserved Domains (3) summary
 +
 
 +
        smart00837
 +
        Location:59 → 145
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        Blast Score: 403
 +
            DPBB_1; Rare lipoprotein A (RlpA)-like double-psi beta-barrel
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 +
        PLN00193
 +
        Location:8 → 248
 +
        Blast Score: 883
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            PLN00193; expansin-A; Provisional
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 +
        pfam01357
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        Location:156 → 233
 +
        Blast Score: 256
 +
            Pollen_allerg_1; Pollen allergen
 +
 
 +
This family contains allergens lol PI, PII and PIII from Lolium perenne.
  
 
===Evolution===
 
===Evolution===
 
Please input evolution information here.
 
Please input evolution information here.
  
 +
 +
===3D Gene Structure===
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  

Revision as of 09:34, 11 June 2014

Please input one-sentence summary here.

Annotated Information

Function

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence

By similarity.

Subcellular location: Secreted › cell wall

By similarity. Membrane; Peripheral membrane protein

By similarity.

Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.


Expression

   Protein name: Os05g0277000 protein 
   
   Protein sequence:

2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202 query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206 gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208 gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213 gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208 gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207 gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212 gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214 gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283 gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214


2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229 query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233 gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235 gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240 gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235 gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234 gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239 gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241 gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311 gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242 


   NM_001061613.1 → NP_001055078.1  Os05g0277000 [Oryza sativa Japonica Group]

   See proteins identical to NP_001055078.1

   Status: PROVISIONAL

   UniProtKB/Swiss-Prot
       P0C1Y4 
   UniProtKB/TrEMBL
       Q0DJI1 
   Conserved Domains (3) summary

       smart00837
       Location:59 → 145
       Blast Score: 403
           DPBB_1; Rare lipoprotein A (RlpA)-like double-psi beta-barrel

       PLN00193
       Location:8 → 248
       Blast Score: 883
           PLN00193; expansin-A; Provisional

       pfam01357
       Location:156 → 233
       Blast Score: 256
           Pollen_allerg_1; Pollen allergen

This family contains allergens lol PI, PII and PIII from Lolium perenne.

Evolution

Please input evolution information here.


3D Gene Structure

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0277000

Description

Similar to Expansin Os-EXPA3

Version

NM_001061613.1 GI:115462956 GeneID:4338279

Length

1006 bp

Definition

Oryza sativa Japonica Group Os05g0277000, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:11429537..11430542

Sequence Coding Region

11429537..11429843,11429990..11430308,11430422..11430542

Expression

GEO Profiles:Os05g0277000

Genome Context

<gbrowseImage1> name=NC_008398:11429537..11430542 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:11429537..11430542 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag</cdnaseq>

Protein Sequence

<aaseq>MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF</aaseq>

Gene Sequence

<dnaseqindica>700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0277000, RefSeq:Os05g0277000

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&oldid=183918"