Os04g0464200

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Revision as of 11:13, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0464200| Description = Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)| Version = NM_001059551.1 GI:115458831 GeneID:4336081| Length = 4...")
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Gene Name

Os04g0464200

Description

Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)

Version

NM_001059551.1 GI:115458831 GeneID:4336081

Length

4817 bp

Definition

Oryza sativa Japonica Group Os04g0464200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:23570056..23574872

Sequence Coding Region

23570333..23570423,23570577..23570683,23570821..23570881,23570958..23571109,23571194..23571271
,23571584..23571697,23571768..23571844,23572016..23572082,23572229..23572294
,23572416..23572539,23572621..23572713,23573334..23573482,23573569..23573649
,23574390..23574532,23574646..23574760

Expression

GEO Profiles:Os04g0464200

Genome Context

<gbrowseImage1> name=NC_008397:23570056..23574872 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:23570056..23574872 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgcgccgtcggcgatcccccgccgcggcctgttcatcggcggcgggtggcgggagccgtccctcggccgccgcctccccgtcgtcaacccggccacggaggcaaccatcggtgacatcccggcggccacggcggaggacgtcgagctcgcggtgtcggcggcgagggatgcgttcggccgcgacggtgggagacactggtcgcgcgcgcctggggccgtgcgggccaagtacctcaaggcgatcgccgctaagattaaagataagaaatcttatctagctttgttggagactcttgattctgggaagcctctggatgaagcagctggggacatggaggatgtcgctgcatgctttgagtattatgctgatctggcagaagctttagatgggaaacaacgggcaccaatctctctacccatggaaaattttgagtcctatgtactcaaagaacccattggggttgttggacttatcactccctggaattatcctctgctgatggctacttggaaggttgcacctgccctggctgctgggtgtacagctgtattaaagccatctgagcttgcttccctgacatgtttagagcttggtggaatatgtgcagaaattggattacctccaggagtcttgaacataattactggtctgggcactgaagctggtgctccattagcttcacatccccatgtggataagattgcttttactggaagcacagaaactggtaagaggataatgattactgcttcccaaatggtcaagcctgtttcgttagagcttggtggcaaaagtcctcttattgtctttgatgatgttgatattgataaagctgttgagtgggccatgtttgggtgttttgcgaacgctggtcaagtctgcagtgctacttctcgtctacttttgcatgagaaaattgcaaagcgattcttggataggttggttgcatgggcaaagagtatcaaaatctcagatccactagaagaaggttgcaggctggggtcagtcgttagtgaagggcagtatcaaaaaataatgaagttcatctcaacagcaagatgtgaaggtgccacaattctatatgggggtgcccgaccacaacacctcaaaagggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaatttaggacagagcgtgaagcagtagaacttgcaaatgatactcactatggtctagctggcgctgtgatttccaatgatctagagaggtgcgagcgcatttcaaaggctatccagtcaggtatcgtttggataaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggttttggccgggagctaggacagtggggcctcgataactacttgagcgtgaagcaagtcaccaagtactgctcagatgaaccatacggatggtaccggcctccatccaagctgtag</cdnaseq>

Protein Sequence

<aaseq>MAAPSAIPRRGLFIGGGWREPSLGRRLPVVNPATEATIGDIPAA TAEDVELAVSAARDAFGRDGGRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDS GKPLDEAAGDMEDVAACFEYYADLAEALDGKQRAPISLPMENFESYVLKEPIGVVGLI TPWNYPLLMATWKVAPALAAGCTAVLKPSELASLTCLELGGICAEIGLPPGVLNIITG LGTEAGAPLASHPHVDKIAFTGSTETGKRIMITASQMVKPVSLELGGKSPLIVFDDVD IDKAVEWAMFGCFANAGQVCSATSRLLLHEKIAKRFLDRLVAWAKSIKISDPLEEGCR LGSVVSEGQYQKIMKFISTARCEGATILYGGARPQHLKRGFFIEPTIITNVSTSMQIW REEVFGPVICVKEFRTEREAVELANDTHYGLAGAVISNDLERCERISKAIQSGIVWIN CSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQVTKYCSDEPYGWYRPPSKL</aaseq>

Gene Sequence

<dnaseqindica>4450..4540#4190..4296#3992..4052#3764..3915#3602..3679#3176..3289#3029..3105#2791..2857#2579..2644#2334..2457#2160..2252#1391..1539#1224..1304#341..483#113..227#ggtgagagagagtgctcgtcgtcgatcgcccaaggtccgggacaacccaaaaggccgcggcgacagcggagcagcagcagcagcagctcgcgccgccccccaaccggaagccatggccgcgccgtcggcgatcccccgccgcggcctgttcatcggcggcgggtggcgggagccgtccctcggccgccgcctccccgtcgtcaacccggccacggaggcaaccatcggtactccgtccctttgcttttgccccccatatccccttcgcccgcatttggtttgctccatcccaagcacgggattccggttaatttgtttgtgggttttgtgatcggtgaaggtgacatcccggcggccacggcggaggacgtcgagctcgcggtgtcggcggcgagggatgcgttcggccgcgacggtgggagacactggtcgcgcgcgcctggggccgtgcgggccaagtacctcaaggcgatcgccgctaaggtgctcagcttctatgcctcctaatcctgctattagtttggactttggagctagatgagttgttgagcagagctctcctatgctgctaacctgctacttccaccttgctgtgtgactgaaacttactttcggggattgattaaaggacgctcttagtgccgtaaactgcttctcaaattaggttgatcaactcgggtttagtattgaaaagaaaattcatacttatgtcccatttttattgcaagtcggtattttacttctgttgtatatgatcataggaagggggtgcacataacaatatattaggaacagtaggaaaaattggaacaacatatcaggaacagtgaaaaatcatggctagtttagtctagcggaaattatgtttactggaagctgtcaatgggtagcagatgagattctccactaaagacaatgttgacttgcccttgctgttacaacgagttcactgttgattatctttgaacaatgggtttctcagacttcagtttttacagatggaagctttctcagattgaatgttatttccagtatgtttacttagtttaccctttttgctgaactttaaatggaaagccccaaggctgaaatttttgttatgatgagaagcccatagtataacttgatcggtgcttttaacaattggtgcccaccctgtcattagtatttttgtttgttataaccggcagtacatttattgaaatgttgtgaactggctgcagattaaagataagaaatcttatctagctttgttggagactcttgattctgggaagcctctggatgaagcagctggggacatggtatgcattattattcacactatggtttttagcatgacacaagattttccgtgctttatttgatgccttggccttgttaattttaggaggatgtcgctgcatgctttgagtattatgctgatctggcagaagctttagatgggaaacaacgggcaccaatctctctacccatggaaaattttgagtcctatgtactcaaagaacccattggggttgttggacttatcactccctggtataagaaatacataccttgccttgaaaaattgatactgtttaattgtatcatagtatatttttttggcttctgggatgttgtagtgtatcgaaatactttgacacgtccaatttccctcgtcttattagactcaaggtgttttgttcacaccggaagcaattgttcttatttcagtcttttcatgcttttgttggttcatgtttgataacagaagaccaattggaaatttcaaattcctcatgttttgcatctgtagttttgttttcctgtcagaggaaagactattaacaaaatatcatgatccttttgtattgtttaccttttgtacgtgatcatccaataactttgaagttgatcttcccaagcccccttcaggtattcataccaatctaaaactctaaaagtgctatgttgatccataaaaaatagtggtggcgttcattgccacctgttgattcctatcacatgagtacagacatgcacccctataacatattgatgttttccgtgtttcattgctttgtgtaaatgcgctttaggcttatgagataaagaaatttgagttatagtaaaaggctaatcgtttggattattttcttattcatgcacacatgaaggaattatcctctgctgatggctacttggaaggttgcacctgccctggctgctgggtgtacagctgtattaaagccatctgagcttgcttccctgtaaggatctaaggattgatcatttacaattcatttatgcaaggtttgtaccccatgactaaaaatatgtttttaaaccaggacatgtttagagcttggtggaatatgtgcagaaattggattacctccaggagtcttgaacataattactggtctgggcactgaagctggtgctccattagcttcacatccccatgtggataaggtcagacctcttcctaatatgtactacattcatgtgcttacaaacacactgacagagtatcacatatttttaagtgactaccctaagttgtttttgaattttatgtggatcctttctgtagattgcttttactggaagcacagaaactggtaagaggataatgattactgcttcccaaatggtcaaggtttgttctctatatatgatcatgccctgaagagaatttctaataacttctgacattgaatgcttctgtcggagcaagaaacctgtgcattatgccttgatgtcctcgtaagtctaattatattgtgctttttttttcttgaacagcctgtttcgttagagcttggtggcaaaagtcctcttattgtctttgatgatgttgatattgataaaggtattaggtatcttccactctccagctttcccacgtcaactatgctcctaattcaattatgcgatgttgtcaaaccacttgttttttgtttaattcattacctgcaattctgtagttattcaagtaagtattgctagctaattgtatgtgtatgtgctaaatttgaaacagctgttgagtgggccatgtttgggtgttttgcgaacgctggtcaagtctgcagtgctacttctcgtctacttttgcatgtacgtatgttcttctgcttattttacagcttaagtcatgtcctcgtacatgacatgaagatatgcacaggagaaaattgcaaagcgattcttggataggttggttgcatgggcaaagagtatcaaaatctcagatccactagaagaaggttgcaggctggggtcagtcgttagtgaagggcaggtaatgtaaatagcttattgcagctcctgaagttcagttgcaaatattcatttctcttgtgaagtgtgaacctgtgaactttgatgaatatttcacgtcattcaaaacaaaattattgctcaagataatagtgaaatactaaaaatgcatgtaacagtaatagtttacttctttggaaattgcttttcttgcaaatattgtattctgcagccatgcctttctatacagccttagataccttgtcatctgaataactgcatcattatgtaattcggtaactcggacgacttaagaacctttttctcatttcagtatcaaaaaataatgaagttcatctcaacagcaagatgtgaaggtgccacaattctatatgggggtgcccgaccacaagtatgtatccttagacttcaagttacattagtccttggttcctcagtatttgatcctaaccaagctaaattggtgtactgacagcacctcaaaagggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcgagaggaagtctttggaccggtcatctgcgttaaagaatttaggacagagcgtgaagcagtagaacttgcaaatgatactcagtgagttgctttatgtggaactgtggaaaaaaaaattaagcctgttcttgtctttttaatctgcttcttttctcagctatggtctagctggcgctgtgatttccaatgatctagagaggtgcgagcgcatttcaaaggtaattttgggttgaattacgacgtgcctatcaattttacccttgactaaatagctgggaccctgggatgatgataacctggtaatgaaatggatgtatttgatctcataaatccacaatacatgtgaaacctgcaggctatccagtcaggtatcgtttggataaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggttttggccgggagctaggacagtggtgagtctattactatacttatttagaacagtaaactcatacaaatgtgataagcagttaatccgcagtgcttgatgtcacaaactgtggccaactgaacaagcattggctgtgcaatctacatcctctgaaatgtctttgcttatgcttcaggggcctcgataactacttgagcgtgaagcaagtcaccaagtactgctcagatgaaccatacggatggtaccggcctccatccaagctgtagatttgtcattcgtgtcaagagcgacggagcacgtcattacctgaaagcaagatcaaccctgtacattcagaacggacggacagaatcttctttacagttgctcttacggtcttacaataagccttgcatggcaatagcaacttatgaattacagtatatgatactgcgtcatcaagcaagccatgtgtgtgctgtatcagactatcattcgctttgtcgagcacctgcatttgtcaccactcaccactgttaaagcaagaatgcaaaatgcaaaatg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0464200, RefSeq:Os04g0464200