Os04g0537900

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Revision as of 11:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0537900| Description = Similar to C13 endopeptidase NP1 (Fragment)| Version = NM_001059963.1 GI:115459655 GeneID:4336523| Length = 4776 bp|...")
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Gene Name

Os04g0537900

Description

Similar to C13 endopeptidase NP1 (Fragment)

Version

NM_001059963.1 GI:115459655 GeneID:4336523

Length

4776 bp

Definition

Oryza sativa Japonica Group Os04g0537900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27302452..27307227

Sequence Coding Region

27302760..27302945,27303074..27303280,27304349..27304555,27304621..27304669,27305258..27305457
,27305545..27305630,27305705..27305861,27306040..27306204,27306937..27307173

Expression

GEO Profiles:Os04g0537900

Genome Context

<gbrowseImage1> name=NC_008397:27302452..27307227 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27302452..27307227 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgcgcggtgctgggtatggggcttcgtcgtcgcgctcctggctgtggcggcggcggcggatggggaggaggaggaggggaagtgggagccgctgattcggatgccgacggaggaaggggacgacgctgaggctgctgctcccgctcctgctcctgcggcggcggattacggggggacgaggtgggcggtgctcgtcgccggctcctccggctacgggaactaccggcaccaggccgatgtgtgccatgcgtaccagattctgcagaagggaggagtgaaggaggagaacattgtggtgtttatgtatgatgacattgcccataacattctcaatccaaggcctgggaccatcatcaaccatcctaaaggtggagatgtttatgctggtgttccaaaggactacactggtcaccaggtcaccactgagaacttctttgctgttctcttgggcaataaaaccgcagttactggagggagtgggaaggttatagacagcaaaccagaggatcacatcttcatctattactcagatcatgggggtcctggagttcttggtatgcctaacctgccgtatctttatgctggtgattttattaaagtgttacaaaagaaacatgcttccaacagctactcgaaaatggttatatatgtcgaagcatgtgaaagtggcagtatcttcgagggcttaatgccagaaaatcttaatatttatgtcacaacagcatccaatgcagttgagaatagttggggaacatactgccctggggaggaaccatcacctcctcctgaatatattacatgtctaggtgacatgtacagtgttgcttggatggaggacagtgagactcataatctaaagaaggaaactatcgaggatcagtatgagctggttaaaaaaagaacatcaaatgcaaataagttaaatgagggctctcatgtcatggaatatggtgacaagacattcaaggatgagaagctcttcctctatcaaggttttaatcctgcaaatggcaacatcacaaatgaattgatttggccagtaccaaaggctacagtcaatcaaagagatgccgatcttcttttcatgtggaagaggtatgagcagttgaatggggtgtctgaagacaagctgagggctcttagggagatagaagacaccatagcacacaggaagcatcttgacagcagtatcgatttcatcgggaagcttgtgtttggttttgaaaatgggcctttagcccttgaggctgcaagaagctctggtcaaccattagtcgacaactgggattgtttgaagaagatggtgcgaatttttgaatctcaatgtggatcactcactcagtatggcatgaaatacatgagagcatttgcaaacatatgcaacaacggtgtctctgaggccaaaatgatggaagcaagtatcaacgcttgcggccgttacaactcggcgagatggagcccaatgactgaaggaggacacagtgcttga</cdnaseq>

Protein Sequence

<aaseq>MAARCWVWGFVVALLAVAAAADGEEEEGKWEPLIRMPTEEGDDA EAAAPAPAPAAADYGGTRWAVLVAGSSGYGNYRHQADVCHAYQILQKGGVKEENIVVF MYDDIAHNILNPRPGTIINHPKGGDVYAGVPKDYTGHQVTTENFFAVLLGNKTAVTGG SGKVIDSKPEDHIFIYYSDHGGPGVLGMPNLPYLYAGDFIKVLQKKHASNSYSKMVIY VEACESGSIFEGLMPENLNIYVTTASNAVENSWGTYCPGEEPSPPPEYITCLGDMYSV AWMEDSETHNLKKETIEDQYELVKKRTSNANKLNEGSHVMEYGDKTFKDEKLFLYQGF NPANGNITNELIWPVPKATVNQRDADLLFMWKRYEQLNGVSEDKLRALREIEDTIAHR KHLDSSIDFIGKLVFGFENGPLALEAARSSGQPLVDNWDCLKKMVRIFESQCGSLTQY GMKYMRAFANICNNGVSEAKMMEASINACGRYNSARWSPMTEGGHSA</aaseq>

Gene Sequence

<dnaseqindica>4283..4468#3948..4154#2673..2879#2559..2607#1771..1970#1598..1683#1367..1523#1024..1188#55..291#gtagtttggctgcttgacctttgtactgtgcttgtgctgtggtcgcggacgacgatggctgcgcggtgctgggtatggggcttcgtcgtcgcgctcctggctgtggcggcggcggcggatggggaggaggaggaggggaagtgggagccgctgattcggatgccgacggaggaaggggacgacgctgaggctgctgctcccgctcctgctcctgcggcggcggattacggggggacgaggtgggcggtgctcgtcgccggctcctccggctacgggaactaccggcaccaggtgagctcgcggtgatggagttgggtgtgttagggtctaggggcgggggcggcggtagagattagagactagtagaaaggaaaggaactgcctttgggggaaaattgaagcttttggcaaattcccctttcttgtgggcgtttttgcagcttgtttggattcgcttcccgattcggagggtgtttactgttaacattcttgctgcaatgctgcttccaatttgtggtagattttactaattcctaaggcaacccttgctccaaggctgtatgttcttctaccaaagctcctgctatctgactactgaaatcggcctatggacatgttctatttgttcagaggcatggctatccaatccgtattgctacttgcttcgcttaaattttgaaagctccatacagttatgttttcgataagagaggaacaatctctaagtcaataattaggtgggaggcatattggttggcaacatcagttttgatcgggcgaagattttttaaattgctataaatatgacgactacgacactacaaataatttattgtccttcctgcatgatttatgtttgtttatcttctaatatattgacgtgcaatccttccgcgcgttcgagaaaaaaagatttatgtttgtttagtgtgtgattgatcaaatacgaacagttcttaagataactgaacaattatatgagtgcttgtttaatggacgttggtgtttcctggtgcattgcaggccgatgtgtgccatgcgtaccagattctgcagaagggaggagtgaaggaggagaacattgtggtgtttatgtatgatgacattgcccataacattctcaatccaaggcctgggaccatcatcaaccatcctaaaggtggagatgtttatgctggtgttccaaaggtagcattttcctttaattgtagtttcaagaaaaagagggtgcaagtagttctagtttcagtcttcaaattcgatttctttttctagtcatgttgtatggatctctaatgctagttttgtatataatttgaatgtgtctgtattcatgcaaggctgatcaacttaacatgcattacaggactacactggtcaccaggtcaccactgagaacttctttgctgttctcttgggcaataaaaccgcagttactggagggagtgggaaggttatagacagcaaaccagaggatcacatcttcatctattactcagatcatgggggtcctggagttcttggtgcatactccagcatatgatatttttcttagttaattttgtatggaacttagcttacaattaacatattttaggtatgcctaacctgccgtatctttatgctggtgattttattaaagtgttacaaaagaaacatgcttccaacagctactcgaaaatggtataagatcattttccccttttcccttccattttttataatccaaaatgatgtacttagactgaaattaaaccctaatttctgcaggttatatatgtcgaagcatgtgaaagtggcagtatcttcgagggcttaatgccagaaaatcttaatatttatgtcacaacagcatccaatgcagttgagaatagttggggaacatactgccctggggaggaaccatcacctcctcctgaatatattacatgtctaggtgacatgtacagtgttgcttggatggaggacaggtaagcttcatttagtatctcttaggtgcgacatcttgtggatttctgttcttctatataatctttttcggtgtgtcacaggtatgccttaagggcttatgtaatttacttttcagtttgcaatacttacaatagtttataccagctacagtcatgactgaacattgttggtccactctatgatgtacatgctcagtttatctttttacgccctggaaatttgtttctgcgttctgatttgggaccactctcaaaagttgtctatttgtctttcaacatctgtacaaatacacagtacatgttttaatatctgtgtggtaagaagtactgccacaaggcataatgtatcaacatgtcttcctgtaatattagtcacctgactaaacataagtaatccacaagtcactgttcttcataatggcaacaaagaaaagcctgtaaaatataggtgaagaaaagtatcaattgatagaacaaccaggtgacaaataacaagtgcatgtattgctttgctgctttacacatacttttacactgtagcaattatgctgtgatgcttgattctgaaagtttttgtccttttgacagtgagactcataatctaaagaaggaaactatcgaggatcagtatgagctggtaagtcttgagtgcactttctcgatattgattcattgttttctactcactgctttcttgggcaggttaaaaaaagaacatcaaatgcaaataagttaaatgagggctctcatgtcatggaatatggtgacaagacattcaaggatgagaagctcttcctctatcaaggttttaatcctgcaaatggcaacatcacaaatgaattgatttggccagtaccaaaggctacagtcaatcaaagagatgccgatcttcttttcatgtggaagagggtaaattctagctgtcttcagtttattcatttccgtccttcctttctttagaagtccaaattgtatgtatataatactgagttgtcgtaaactagggttcttccactactataagttggtcggcgaatattaatataaaactagcatgttaactgaaacatgatcacacacaagttacatactttggatgaaacatatagattatgatttttattttcctttttcttgctgccgaatagaatggacagaggcatggccccttgatgcattgacatatattgcattctgacattatgttgttaggataatggtgttgaatttgctagagtagtttctttcatgttgatttggttgacatcgcctgtaagaattggcatcattatctctgcatcattatctcttttattgttaactggggctctcttgtttagttctgatctttattttctactagaacaaatgcccgtgtgttgcaacgggtgaaggctattttaatcttattattgtatacggtttaactaaggtgaaattgactgtgggaatttgattggatattttcttttttaagaaaatcatgagctgcaattaggagtctgcatgcaagattttttaaagagatttcttatacgactccttatgtatttctaaaagcaaacgaacttaaaatccaactcaaacacggatttgtatttccaaaagcgaacggactttgaaaaccgactcaaacacggatgacgtactaaaataccggcaaaaacatcttcaatttttataatagtagagattgctcatgaccttggatatttattctatggacacttcaccctttcttgcctctacttgtgtatggaaataatggaatacatttcatatttgaaagggtatagtgtgatatgcttcgtatttaaaaaggccatcacatggtgtacgtgtgacagctgatagcatgatactatgtgagctccatttccgagaacaggactaagttaagatgtctgaatttttaagccagaaatattttcagagcatatgacagtttcatgctaatgtctgtatttactttttcagtatgagcagttgaatggggtgtctgaagacaagctgagggctcttagggagatagaagacaccatagcacacaggaagcatcttgacagcagtatcgatttcatcgggaagcttgtgtttggttttgaaaatgggcctttagcccttgaggctgcaagaagctctggtcaaccattagtcgacaactgggattgtttgaagaagatggtgagtacaaggctcttttttttaactctgatataagccatctataaatatttcttgagttattgtcttcttgttgcctgttggccttaattgcacaatgctatccttggttccttgccaattgtcaggtgcgaatttttgaatctcaatgtggatcactcactcagtatggcatgaaatacatgagagcatttgcaaacatatgcaacaacggtgtctctgaggccaaaatgatggaagcaagtatcaacgcttgcggccgttacaactcggcgagatggagcccaatgactgaaggaggacacagtgcttgatccccggctatatacaggtaaaattgaataccaaaggccccggaggtttgcagacctcatttgtgtgaacttctgtatataccatggagacaacaatatagctagcgacccaacaatatggccccttgtgtgatggctaatcagtaggtgtcatatgcttgttgtacccaacaatatggcttgtgtgtgatgtggccctctgtaaattactcgattagcaatcgatccaagaatgattatgaccaaatatgtgcatgatgttgtcttcagacttgataataaacaagtaggccaattattagtggacg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0537900, RefSeq:Os04g0537900