Os05g0276500

From RiceWiki
Revision as of 08:52, 24 May 2014 by LQ (talk | contribs) (Annotated Information)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Os05g0276500 locate at the chromosome5,it's gene type is protein coding,and expression information at root and stem.

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0276500

Description

Expansin Os-EXPA3

Version

NM_001061612.1 GI:115462954 GeneID:4338278

Length

1781 bp

Definition

Oryza sativa Japonica Group Os05g0276500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:11404176..11405956

Sequence Coding Region

11404443..11404752,11405334..11405655,11405755..11405890

Expression

GEO Profiles:Os05g0276500

Genome Context

<gbrowseImage1> name=NC_008398:11404176..11405956 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:11404176..11405956 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctctctggaatggagaaacaacctgcaatgcttctcgttcttgtgacactctgcgccttcgcatgcaagcgatccgtcgcacagtctgcctttgccacgttctacggtggcaaggacgggtcgggcaccatgggtggcgcgtgtgggtacggtaacctgtacaacgccgggtacgggctgtacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcacctgcgacaccagccagaccaagtggtgcaagcccggcggcaactccatcaccatcacggccaccaacttatgcccgcctaactgggcgctgcccagcaacagcggcgggtggtgcaacccaccgcggcagcacttcgacatgtcacagccggcctgggagaacatcgccgtctatcaagccggcattgtccccgtcaactacaagagggttccgtgccagaggagcggggggatccggttcgcgatcagcggtcacgactactttgagcttgtgaccgtgacgaacgtgggcggcagcggcgtggtggcgcagatgtcgatcaaggggtccaacacgggctggatggcgatgagcaggaattggggcgccaattggcagagcaacgcgtacctcgccgggcagagcctgtccttcattgtgcagctcgacgacggccgaaaggtcacggcctggaacgtcgccccgtccaactggttcttcggtgccacctactctacctcttgggtgcagttctga</cdnaseq>

Protein Sequence

<aaseq>MLSGMEKQPAMLLVLVTLCAFACKRSVAQSAFATFYGGKDGSGT MGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITI TATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSG GIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQ SLSFIVQLDDGRKVTAWNVAPSNWFFGATYSTSWVQF</aaseq>

Gene Sequence

<dnaseqindica>1205..1514#302..623#67..202#acaaaacgaaaacctaaagaatcaccagccttgcaaaccaatcaacctgtctagattaatttttgcatgctctctggaatggagaaacaacctgcaatgcttctcgttcttgtgacactctgcgccttcgcatgcaagcgatccgtcgcacagtctgcctttgccacgttctacggtggcaaggacgggtcgggcaccatgggtacgtacatttcaagcttaatttgatattttctcaaacaaattagctgatgatgatgatgccatttctgaacttggatgtacgtgcgacgcgatgcaggtggcgcgtgtgggtacggtaacctgtacaacgccgggtacgggctgtacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcacctgcgacaccagccagaccaagtggtgcaagcccggcggcaactccatcaccatcacggccaccaacttatgcccgcctaactgggcgctgcccagcaacagcggcgggtggtgcaacccaccgcggcagcacttcgacatgtcacagccggcctgggagaacatcgccgtctatcaagccggcattgtccccgtcaactacaagaggtacatgcatcctactcctagttgaataatagccgaaatcgttatagatcaaagatcaatcggagatatatatatgtttgaagtgtttttttttactcgaattgatatacacactcactagctagctcatgaaggcacatcgataacgggtctagaaggattataggttcatgcttgtttcatgctagcaccaatttttcagtaccaatgctatcgatcactagttctagttttgaaacggcttatatgtatcgatactagtgtaaaaccagtacctaccagactaccagagatgggctaacagactcaaagcaggtactgtaatagactataaatcggctacaaacttatgtagagtagataagagaggagagataagagaagcggactacttagccagctgcagcacgtacatagatactgacgatgatttggagctagtaatttactatactattaaacttgctctcataattaccggtgctagactagaaacggcacctataatctgacataggtgcacacagctagtagtaaggtttctcaaaaaacctcacaaatgctgcttgtgtccaatgcagggttccgtgccagaggagcggggggatccggttcgcgatcagcggtcacgactactttgagcttgtgaccgtgacgaacgtgggcggcagcggcgtggtggcgcagatgtcgatcaaggggtccaacacgggctggatggcgatgagcaggaattggggcgccaattggcagagcaacgcgtacctcgccgggcagagcctgtccttcattgtgcagctcgacgacggccgaaaggtcacggcctggaacgtcgccccgtccaactggttcttcggtgccacctactctacctcttgggtgcagttctgaagtactgcaacgtacgtacaggtttagttgataaattatacacatgctgttcatggacataattaattaattactagccatcccggccgtttgtgcatgttctgctaggttgtgtgttgcgtggcattaacttgtttttctctgttaccagtcgttttgtcaaacgcgttggttgtggcaagcgcgattgaatgttttgcccaccaattaatgtaactgatcgtatgggtgttgagttaataaattatgtttaattatgcggatgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0276500, RefSeq:Os05g0276500