Os01g0578000

From RiceWiki
Revision as of 04:45, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0578000| Description = RecA bacterial DNA recombination family protein| Version = NM_001049929.1 GI:115437841 GeneID:4323853| Length = 4979...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0578000

Description

RecA bacterial DNA recombination family protein

Version

NM_001049929.1 GI:115437841 GeneID:4323853

Length

4979 bp

Definition

Oryza sativa Japonica Group Os01g0578000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:24010272..24015250

Sequence Coding Region

24010568..24010746,24012475..24012541,24013251..24013382,24013579..24013805,24013885..24013955
,24014026..24014059,24014300..24014422,24014706..24014810,24015059..24015170

Expression

GEO Profiles:Os01g0578000

Genome Context

<gbrowseImage1> name=NC_008394:24010272..24015250 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:24010272..24015250 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagatcgccgacctccccatcgccacctcccaccgcgccaacctcctcgccgccggctactcctccctcgccgcgctctccgccgcctcccctccccgcctcgcccgagatttgagcattgaggtacatgaggctgaagaaatcctcaaggttgccgtgggcgccaacaagtccaagggagcagatgggcctagcaccagcagtgttctcaaaggtgtgcaaaatgcatgggatatgctatctgatgagcaatcacggaggcacatcaatactggatctgctgacctcaacaacatccttggtggagggattcactgtaaagaggttactgagattggtggtgtcccaggagtcggtaaaactcaactggggattcaactagcaatcaatgttcaaattccagtggagtatggtggacttggtgggaaagctgtttatatagatacagagggaagtttcatggttgaacgtgtctaccaaattgctgaagggtgcatcagtgatatactggagtactttccacactgccatgacaaggctccagccggacaagaaaaactgaagcctgagagtttcctggctgacatctactactttcgaatatgcagctatactgaacaaattgcagtcataaactatctggaaaagtttcttggggagcataaagatgtaagaatagttattattgacagcgttactttccactttcggcaagattttgatgatatggcactaaggactagagtgcttagtggattatcattgaagttgatgaaactttcaaaggcatataacttggcggttgtcttgttgaaccaagttactactaaattcacagaaggatcatttcagttaactcttgctctaggtgacagttggtcccactcatgcaccaatcgactaattctgtattggaacggcaatgagcggtatggattcctggacaagtccccttcactaccagtagcatcagcaccatatgcagtgacagttaaaggggtgagagatgctgtgaattcaaacagcaagcgagtccgggtaatgtag</cdnaseq>

Protein Sequence

<aaseq>MEIADLPIATSHRANLLAAGYSSLAALSAASPPRLARDLSIEVH EAEEILKVAVGANKSKGADGPSTSSVLKGVQNAWDMLSDEQSRRHINTGSADLNNILG GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVY QIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQIAVINYLEKF LGEHKDVRIVIIDSVTFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNLAVVLLNQVT TKFTEGSFQLTLALGDSWSHSCTNRLILYWNGNERYGFLDKSPSLPVASAPYAVTVKG VRDAVNSNSKRVRVM</aaseq>

Gene Sequence

<dnaseqindica>4505..4683#2710..2776#1869..2000#1446..1672#1296..1366#1192..1225#829..951#441..545#81..192#aaaaaaaaaaaccatcgccagtcgccgcccgcgcggagcatccatcctcaacctcccaagttcggcgcccaatcccggcgatggagatcgccgacctccccatcgccacctcccaccgcgccaacctcctcgccgccggctactcctccctcgccgcgctctccgccgcctcccctccccgcctcgcccgaggtacgcccccccacccatcaccccccacctgcggggggttagggtttagggatgattagctagtgcgttcgtgctccgatggatgatccccctttttttgctcgaattggtaccagtgtctttgctcctagtctcgtgccgcgtagctgtgatatttatgtctcttattaagacattgcttggtcatctcgtgtgcgtgtgtgtctattggaggatgagccactgttcttggcatgttgtttttgcagatttgagcattgaggtacatgaggctgaagaaatcctcaaggttgccgtgggcgccaacaagtccaagggagcagatgggcctagcaccagcagtgttctcaaaggtacaattactctcggtccgctccgatgcaattttcttggtagatttatctgtgctttggtttccctgtgccatgctttcttattgtgtaaggtaaaatgatgccctaggacgatatggtgtgcacatatactttgcctccgtgggaacattttattgtttcccaatcatcaataacccatgtttgattctgtgaggtcctaatttgtttgatgtcacggagatccttgacataacaatggaccataatttgtactgcttttgactcgtgcggatatttacaggtgtgcaaaatgcatgggatatgctatctgatgagcaatcacggaggcacatcaatactggatctgctgacctcaacaacatccttggtggagggattcactgtaaagaggttactgagattggtgagttacttttaacgtctctactaacaaagggatgagattcactatctcctgataaagccattaattttccattcctccgacgaattgtattgattataacgatccatgtcctatgtggatactgaatatctgataagcctttggttttcccctattttcttgtagacattgattgttatgcccatctttttttaatctgaagtgattggcctaatcaacacatctagtttgattcaggtggtgtcccaggagtcggtaaaactcaactggggtatgttgtacacaatattaaatgcaaattcagatgaagatttcactactaaagacctaacttttgtcaggattcaactagcaatcaatgttcaaattccagtggagtatggtggacttggtgggaaagctgtttatataggtacatagtttcacactaaggcacttatcatcttttgtcttagcaataaagtcttaagagtatctgcttattttaacagatacagagggaagtttcatggttgaacgtgtctaccaaattgctgaagggtgcatcagtgatatactggagtactttccacactgccatgacaaggctccagccggacaagaaaaactgaagcctgagagtttcctggctgacatctactactttcgaatatgcagctatactgaacaaattgcagtcataaactatctggaaaagtttcttggggagcataaagatgtaattttcttgaacaatttagtcttgaattattagtttataaccaccttaagtttgtaccttaatttcttcaaaataaatatgttttgcattaacgcaattttgtcccacagtagtttcatgccatgccattgcttttacaatctaccacaatttatgaaattgaagccaataattttttcttcctccttgacaggtaagaatagttattattgacagcgttactttccactttcggcaagattttgatgatatggcactaaggactagagtgcttagtggattatcattgaagttgatgaaactttcaaaggcatataacttggcggtaagctgcctaccctattagatcaagtgaagcaggagctaccactgttggtgttagtttcgtaaaatggagatctgtgcatattcattcaacatctgcaatatatgtgctgtcattatgtcatccgtcttgattgatgtaattttggatatactcatatggtaacacaaagccattatacttctacaaaaacactaggtttcatttttcttgattgattactagactcaaccagagtgatattctagttgctaaagcgagatttgaggtagctttataagcacgtaacatttcaacttcagacaaatcaaattagttctgttcagcagcagcaaacacgattttattttgttaatggaatgtgctaagacttgttcttcattgtattgagattcaaatgggattttatcagtggagatcaaagattagaaggaacaaatgcctttatgggtgaagataaactattgaccactaggggcatggtctgctcggaaccacaatagttaccctcatggccatttcataatttgctaaccacacaattactttatgctatcctttcttccactatcctccccattcatatttctttatcccattttgctcattcctctataaatcaggaatgacttaattacggttttgccttaggtagagataccctgcgcaatgaggttaacatacttatcatcttattttgtttgagcaggttgtcttgttgaaccaagttactactaaattcacagaaggatcatttcagttaactcttgctctaggtcagtttctattcataaattataacccctctttttagttcgcaatcaccatcaaatgcctacattttctctttgttccctaataatcactagtgactaaaattaaagaacctgacttgatgttcttactgctgtgggctttgatttgatgggctgtggctaggttggccttcattagggagtaattatatcgagttgcattagagataagtactaggaatttatattacagacctttttaggtgagtattagaaatacaattaccatctacctatgatgatatttgctcattatattattaagagatggtgaaaaagagccactatgttcactctcaactctcaaggactggaaatcaccaccttaatcaagagaaagcaaaatatctatgtcattgatcatggcagagcccaaattatgactatgtgatatcacctatacagtatacaatatactattttattattgaaatagaatcgagagttatcaaatacatttctacttttgaatcaattgtaacctagctctgtacaatttgtgttggaaatttggtaactgtctactaatttaaggttgttatgggtggggacctgccctataaacgctatcggacagtttaagaagaatttagcatcgaataaacaaatctccaagtctctctgtctcacatatatccagacattcagttgctcctaatgatttctgtctcctctctgccaagcctactctttcaactaatgggtttacctcaaattgtccgtgtgtgatcttcctctgatcatagttattagaaccggaccagaccggcggtccgaccggaataaaccggaaccagcgctcttagcagtcaggttcgattaaaagaccgttgcgcaatcggactggtaaatacccggtcaaaccgggcggttttttggtaaactggccagttctctagattttggccggttataagccggtgattgcccacgtgggcttgtcagccattgctcgagtatataatataagagaaaattgaggtaaaaagagtgaaggctgggaatcgaacccgtgatcacgcgtgcaacacccaaatactccaccgttggtctatgacatttgttggtctttatgatgcgtcatttatctatttaacccggatcaaaccggtggtctaaccggttagaccaataaaccaatgaaccgagcacttagcggttcgatcaccggtccggtcttaatagctatgcctctgatggatgcttaccctgttatgtggtttgtaatacttactaagagagtaaaactatgcttggctgctataccttggtttgtaacacttactaagttttggctactatacctaagatagtttaatttatggggtagatggcatgttttgggatactctgttatttagagttaatgaattattatcctgggatatcaattccagttattgcttgtagcaagcaaagctgtggggtccttctggttgtagttcactttgaaaaccatgataatgcaggtgaattaatattatgttactaatttcatgccatttttattttgtcacaaaatcgaaacagattcccccgctggaatgtaaataaaatgactacaaaaatatataagatgcacgtacaaccttgatatgttccttttgtgcagcatgttacttgccgactatttcttgtattggaccgtcgtttgtaaggaatggtaataatgaaaatgctgctatgcaggtgacagttggtcccactcatgcaccaatcgactaattctgtattggaacggcaatgagcggtatggattcctggacaagtccccttcactaccagtagcatcagcaccatatgcagtgacagttaaaggggtgagagatgctgtgaattcaaacagcaagcgagtccgggtaatgtagcaatcttggtgttgaacccttttaccattagtagccatcgaccgtcatgtctaaactgtgcagcattctctgatctttctaactaagctgattgaaatttggatcatgtgtaacgctgtcttatttgcttctgccggtagctaattgtacaaaggtaactgaagcaaaagagggtgcttcattttggttgatccaaacatgtaacagctaacaagtactctacaggcctgttacaaacttacaaacagaatgatgccggatgtgttccgatgccaggaaattatcctcgttttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0578000, RefSeq:Os01g0578000