Os01g0878700

From RiceWiki
Revision as of 05:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0878700| Description = Amino acid/polyamine transporter II family protein| Version = NM_001051516.1 GI:115441402 GeneID:4325094| Length = 4...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0878700

Description

Amino acid/polyamine transporter II family protein

Version

NM_001051516.1 GI:115441402 GeneID:4325094

Length

4296 bp

Definition

Oryza sativa Japonica Group Os01g0878700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39889322..39893617

Sequence Coding Region

39889602..39890610,39890704..39890797,39890890..39891123,39893481..39893544

Expression

GEO Profiles:Os01g0878700

Genome Context

<gbrowseImage1> name=NC_008394:39889322..39893617 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39889322..39893617 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgtggagaaggtggagaggaaggaggtggccgtcgacgacgatggccgcgtcagaacaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtgctggcgctgccgtggagcgtggcccagatggggtgggtgctcggccccatcgccctcgtcgtctgcgcctacatcacctactacaccgccgtcctcctctgcgactgctaccgcacgccggaccccgtccacggcaagcggaactacacctacatggacgtcgtccgctcatgcctcgggcctcgagacgtggtcgtgtgtggcattgcgcagtacgcgattctctggggcgcaatggtgggttacaccatcacgaccgctacgagcatcatgtcagtggtgcgcacgaactgccaccactacaaggggccggacgcgacctgcggctcgtccgggacgatgtacatggtgctgttcggcctcgcggaggtcgtcctgtcccagtgcccgagcctggagggggtgacgctcatctccgtcgtcgccgccgtcatgtcgttcacctactccttcgtcgggctcttcctcagcgccgctaaggtcgcgtcgcacggcgcggcgcacggcaccctcctcggcgtcagggtcggcgccggaggcgtcaccgcgtcgaccaaggcgtggcacttcctgcaggcgctcgggaacatcgccttcgcgtacacctactccatgctgctcatcgagatccaggacacggtgaagtcgccgccgtcggagaacgtgacgatgaagagggcgagcctgtacggcatcggcgtcacgaccgtcttctacgtgtcgatcgggtgcgtcgggtacgcggcgttcggcaacgccgcgcccgggaacgtcctcaccggcttcctcgagccgttctggctcgtcgacatcgccaacgttgccgtcgtcatccacctggtcggagcgtaccaggtgtacgcgcagccggtgttcgcgtgctacgagaagtggctggcgagccgttggccggagtcggcgttcttccaccgggagtacgcggtgccgctgggcggcgggcgcgcggtgcggttcacgctgtgcaagctggtgctgcgcacggcgttcgtggccgtgacgacggtggtgtcgctggtgctgccgttcttcaacgccgtgctcgggctgctcggcgccgtcgcgttctggccgctcacggtgtacttcccggtgaccatgtacatggcgcaggcgaaggtgcagagaggcagccggaagtgggtggcgctgcaggcgctcaacgtcggcgcgctcgtcgtgtcgctgctcgcggcggtgggctcggtggccgacatggcgcagcgcctgcgccacgtcaccatcttccaaacgcagctctga</cdnaseq>

Protein Sequence

<aaseq>MDVEKVERKEVAVDDDGRVRTGTVWTATTHAITAVIGSGVLALP WSVAQMGWVLGPIALVVCAYITYYTAVLLCDCYRTPDPVHGKRNYTYMDVVRSCLGPR DVVVCGIAQYAILWGAMVGYTITTATSIMSVVRTNCHHYKGPDATCGSSGTMYMVLFG LAEVVLSQCPSLEGVTLISVVAAVMSFTYSFVGLFLSAAKVASHGAAHGTLLGVRVGA GGVTASTKAWHFLQALGNIAFAYTYSMLLIEIQDTVKSPPSENVTMKRASLYGIGVTT VFYVSIGCVGYAAFGNAAPGNVLTGFLEPFWLVDIANVAVVIHLVGAYQVYAQPVFAC YEKWLASRWPESAFFHREYAVPLGGGRAVRFTLCKLVLRTAFVAVTTVVSLVLPFFNA VLGLLGAVAFWPLTVYFPVTMYMAQAKVQRGSRKWVALQALNVGALVVSLLAAVGSVA DMAQRLRHVTIFQTQL</aaseq>

Gene Sequence

<dnaseqindica>3008..4016#2821..2914#2495..2728#74..137#gctcaaaatcctttccgctcagataagagaggccggagactgagagagagggaaactcgtacacagagagagtatggacgtggagaaggtggagaggaaggaggtggccgtcgacgacgatggccgcgtcagaacaggtaattctcaggatcctctctgtttccagttcgcgtttgcacagtcgtcgtcgtcgccgaaaatcctactactatcctacggctaccctgcctgtctttcttctgctaggaaggcacctgaacagttcatgcttcatgcagagtatttagctgctgtttcctctgaaactctgttccgttgttcatcgtagtttagctgcatgttcattgtcaccacataccgttgagtgtggtagatctgcgagcctctgtcattgctgaatttggacagaaacgtgcattgctggcgtacgttggagggtggttattgacttgtgcctctctttcaagtgagagctagccagatgtgtgcccagtggaaagacgctttcagacttcagcgcgctatggaacatgcggttgtcttgcatcctttcgaaaccttgtaggactctctcgttttgcttctccaagtacatgcaaaaaaaaaaaagatttggaattagtcaatgcatgattttgctgtccaagccgtctgatggagcatacacgcatgcatgggcactgaaagtcaaacccttcttttccattttgtttacgccgcgccgtactggaagaaccaaacaaatacacactgcaaatgcagaggcagggaatttacacttctcttattaaacactgccatataatgaattcaatgcctattttagtgttttatcttaaagaaatgccatgtaaaagagttgtccccttttacatgtcttgtttcttggatgcatgtctagctaatgagatgctacactcccgaatacgcacatattctttcttctgttttacacacaacactcgtcacagcattgcagcaacatccctgaaactcgggatagatttaatagaggcatcttgcgtatatgctagcattattggataaaaccaacacctgaaaatgcgaaatccattgcgtgaagcttctgttaccactgcttttactaggacaacgtgaaggatagtaacagtgttagtggcatagtatttatgcaggaactgggtcctaattcccatatagttacagcacgcaacctcttgcaagatccaaatcgccaatgacttggcaggcactacctctactctactatataccctaccaagtccaagtggccttggctttactagtgttatacggtacagcagtactaatactccaggattataggcagaatttcaatatgtgcaatcattatcctaatgttatattggaatcccagaaacaatggaaaacactatttgttggcaatagcctattggaacgtttcttcttcgcgtgagggagcaatggattaggtatcgatgaatggctgcaaattaacctgcagcttgtgctctctccacttacatcacgcatcctaattcgacaaatagctttcatggtattaaagtaaaacatagtgcatattctgttgtactactacttcctttttctggttatcttgggtgtactgttgtgagttgtgactagctatcataggctgtgatgaagagcgggccattaagcagtcttgacaatgaccagttaagtataagtacactcatgtcaaataataggatttcggggcaattgtctattgtaattaaggaattttactggacaaaagtttgactgtactttagccctgctagtactttacatcagggagcaagtgcctgatttcacatcatacttcctttgcatgttgatgttggttgggataccacatcatactccacataggccaccagagcattacataagtgttttcattcatgtgcgtgcttacgttgttcaaaagagtctgtttatacatttgcgatgattcgttagtttaacacaagtaagacagcaaatatttctttagttgttttaagtgttactgctttaggacatggtgattaaatcacatgcgtaatatatgaacctgttgctctatttgtactcgttagttggtctgctttacgttatggtatccagcgcatgggcagtagatcaaacggattctttgtttatgacacatgatggaatcctggagatccttttgaaaaaatgatggcttcttacactactgggaagttgacttgtgcaatgttgcatcatgcccactgtaattgatctatgatctggcgatctctttttagccgcgctgatatggcaatctcttcaatgcactgcatctttattgatgttcatgcttaatcagccaggtgttccaagagaccaagaaggcaagaatgtcacacgtaatgtaaatgacagtgacctgtcagacattctcacaggattttttttttctcacaagaacgcaagaatggcactgacgaaactgaattttgtttccttttcacaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtgctggcgctgccgtggagcgtggcccagatggggtgggtgctcggccccatcgccctcgtcgtctgcgcctacatcacctactacaccgccgtcctcctctgcgactgctaccgcacgccggaccccgtccacggcaagcggaactacacctacatggacgtcgtccgctcatgcctcggtagctaagaacctttgagacttacctgcattttctcctgcaaaatctctgcgatttctgacaagactgttgctttgatcgatcgtgtgaagggcctcgagacgtggtcgtgtgtggcattgcgcagtacgcgattctctggggcgcaatggtgggttacaccatcacgaccgctacgagcatcatgtaagcttagctccagcttcttggccaccctgaaaaatcttggcaaatttttgttcagtaacatgtactaggatttgggccgtgagaatgcaggtcagtggtgcgcacgaactgccaccactacaaggggccggacgcgacctgcggctcgtccgggacgatgtacatggtgctgttcggcctcgcggaggtcgtcctgtcccagtgcccgagcctggagggggtgacgctcatctccgtcgtcgccgccgtcatgtcgttcacctactccttcgtcgggctcttcctcagcgccgctaaggtcgcgtcgcacggcgcggcgcacggcaccctcctcggcgtcagggtcggcgccggaggcgtcaccgcgtcgaccaaggcgtggcacttcctgcaggcgctcgggaacatcgccttcgcgtacacctactccatgctgctcatcgagatccaggacacggtgaagtcgccgccgtcggagaacgtgacgatgaagagggcgagcctgtacggcatcggcgtcacgaccgtcttctacgtgtcgatcgggtgcgtcgggtacgcggcgttcggcaacgccgcgcccgggaacgtcctcaccggcttcctcgagccgttctggctcgtcgacatcgccaacgttgccgtcgtcatccacctggtcggagcgtaccaggtgtacgcgcagccggtgttcgcgtgctacgagaagtggctggcgagccgttggccggagtcggcgttcttccaccgggagtacgcggtgccgctgggcggcgggcgcgcggtgcggttcacgctgtgcaagctggtgctgcgcacggcgttcgtggccgtgacgacggtggtgtcgctggtgctgccgttcttcaacgccgtgctcgggctgctcggcgccgtcgcgttctggccgctcacggtgtacttcccggtgaccatgtacatggcgcaggcgaaggtgcagagaggcagccggaagtgggtggcgctgcaggcgctcaacgtcggcgcgctcgtcgtgtcgctgctcgcggcggtgggctcggtggccgacatggcgcagcgcctgcgccacgtcaccatcttccaaacgcagctctgaacccggatggacgcatgcagccgatgagattatgcatgtagtactactcctactacttttgttgctgtactcgtactagttgctggtgtaatttggctgtcgtgttacaagctactactactagtacaagcccctctgtttttatacctctgaatttagcaaatgggacttgaggagtatggttatcctatggacaaaactgtgtacgttattccggttgggatcgtcaagcatagcatataggaatttcgggtgaaagaattcaattatgagtattagc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0878700, RefSeq:Os01g0878700