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B
io
C
ode
a repository archiving codes for bioinformatics tools
High-throughput sequencing
WGS analysis
WES analysis
De novo sequencing analysis
RNA-seq analysis
ChIP-seq analysis
Microarray
aCGH and SNP microarray
ChIP-on-chip
DNA methylation microarray
Gene expression microarray
MicroRNA microarray
Mass spectrometry
MS-based untargeted proteomics
MS-based targeted proteomics
MS-based metaproteomics
Proteogenomics
MS-based untargeted metabolomics
NMR spectroscopy
NMR-based proteomics
NMR-based metabolomics
PCR
Single-cell qPCR
qPCR
dPCR
Flow cytometry & mass cytometry
Flow cytometry
Mass cytometry
Bioimaging
Image segmentation
Multiview deconvolution
Image-analysis libraries
FISH
cryo-EM
Other omic technologies
Sanger sequencing
DNA fingerprinting
Optical mapping
nCounter System
Circular dichroism spectroscopy
Genomics
Genome annotation
Phylogenetics & phylogenomics
Comparative genomics
Population genomics
Genomic variation
Epigenomics
DNA methylation
Histone modifications
Nucleosome positioning
Genome structure
Chromatin-state detection
Transcriptomics
Pseudouridine site prediction
RNA methylation data
RNA methylation prediction
miRNA data
LncRNA data
Proteomics
Protein sequence analysis
Protein comparison analysis
PTM analysis
Metabolomics
Metabolite enrichment analysis
Transcriptomic and metabolomic data integration
Glycomics
Metabolite libraries
Spectral libraries
Fluxomics
Constraint based methods
13C-fluxomics
Pathway analysis
Differential network
Gene network data
Gene network inference
Protein-protein interaction data
Protein-protein interaction prediction
Genotype-phenotype analysis
GWAS analysis
Linkage analysis
QTL mapping
eQTL mapping
EWAS
Drug discovery
Chemical enrichment analysis
Protein-protein interaction modulators
Small molecules
Chemical translation
Virtual screening
Synthetic biology
RNA design
Translation efficiency
Gene design
Essential genes
Plasmid collections
Metabolic engineering
Strain design
Thermodynamics
Biomolecular structure
Structure conservation prediction
Repetitive element prediction
Volume calculation
Allosteric site prediction
Co-evolving residue prediction
Health/Medical research data
Certain infectious and parasitic diseases
Neoplasms
Diseases of the blood and blood-forming organs
Endocrine, nutritional & metabolic diseases
Mental and behavioural disorders
Immunology
Antibody structure
B-cell epitopes
T-cell epitopes
Innate immunity
Allergen prediction
Text mining
