High-throughput sequencing

• WGS analysis
• WES analysis
• De novo sequencing analysis
• RNA-seq analysis
• ChIP-seq analysis

Microarray

• aCGH and SNP microarray
• ChIP-on-chip
• DNA methylation microarray
• Gene expression microarray
• MicroRNA microarray

Mass spectrometry

• MS-based untargeted proteomics
• MS-based targeted proteomics
• MS-based metaproteomics
• Proteogenomics
• MS-based untargeted metabolomics

NMR spectroscopy

• NMR-based proteomics
• NMR-based metabolomics

PCR

• Single-cell qPCR
• qPCR
• dPCR

Flow cytometry & mass cytometry

• Flow cytometry
• Mass cytometry

Bioimaging

• Image segmentation
• Multiview deconvolution
• Image-analysis libraries
• FISH
• cryo-EM

Other omic technologies

• Sanger sequencing
• DNA fingerprinting
• Optical mapping
• nCounter System
• Circular dichroism spectroscopy

Genomics

• Genome annotation
• Phylogenetics & phylogenomics
• Comparative genomics
• Population genomics
• Genomic variation

Epigenomics

• DNA methylation
• Histone modifications
• Nucleosome positioning
• Genome structure
• Chromatin-state detection

Transcriptomics

• Pseudouridine site prediction
• RNA methylation data
• RNA methylation prediction
• miRNA data
• LncRNA data

Proteomics

• Protein sequence analysis
• Protein comparison analysis
• PTM analysis

Metabolomics

• Metabolite enrichment analysis
• Transcriptomic and metabolomic data integration
• Glycomics
• Metabolite libraries
• Spectral libraries

Fluxomics

• Constraint based methods
• 13C-fluxomics

Pathway analysis

• Differential network
• Gene network data
• Gene network inference
• Protein-protein interaction data
• Protein-protein interaction prediction

Genotype-phenotype analysis

• GWAS analysis
• Linkage analysis
• QTL mapping
• eQTL mapping
• EWAS

Drug discovery

• Chemical enrichment analysis
• Protein-protein interaction modulators
• Small molecules
• Chemical translation
• Virtual screening

Synthetic biology

• RNA design
• Translation efficiency
• Gene design
• Essential genes
• Plasmid collections

Metabolic engineering

• Strain design
• Thermodynamics

Biomolecular structure

• Structure conservation prediction
• Repetitive element prediction
• Volume calculation
• Allosteric site prediction
• Co-evolving residue prediction

Health/Medical research data

• Certain infectious and parasitic diseases
• Neoplasms
• Diseases of the blood and blood-forming organs
• Endocrine, nutritional & metabolic diseases
• Mental and behavioural disorders

Immunology

• Antibody structure
• B-cell epitopes
• T-cell epitopes
• Innate immunity
• Allergen prediction

Text mining