项目编号 PRJCA002030
项目标题 IGDB soybean pan-genome project
涉及领域 Agricultural
数据类型 Whole genome sequencing
Transcriptome or Gene expression
Genome sequencing and assembly
Genome sequencing
Assembly
物种名称 Glycine soja
Glycine max
描述信息 In this project, we provide 26 de nove assembly soybean genomes and 2,898 whole genome sequencing dataset of soybean accessions for constructing a pan-genome and discovering genetic diversity of soybean.
样品范围 Multispecies
发布日期 2020-04-09
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
32553274 Pan-Genome of Wild and Cultivated Soybeans Cell 10.1016/j.cell.2020.05.023 2020
37759803 Exploring Pan-Genomes: An Overview of Resources and Tools for Unraveling Structure, Function, and Evolution of Crop Genes and Genomes Biomolecules 10.3390/biom13091403 2023
41280085 Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes bioRxiv 10.1101/2025.10.27.684862 2025
38977969 Natural variation of domestication-related genes contributed to latitudinal expansion and adaptation in soybean BMC Plant Biology 10.1186/s12870-024-05382-0 2024
40102717 Genomic variation and evolutionary patterns in organelle genomes between annual and perennial Glycine species BMC Plant Biology 10.1186/s12870-025-06312-4 2025
36578334 Identification of QTN-by-environment interactions and their candidate genes for soybean seed oil-related traits using 3VmrMLM Frontiers in Plant Science 10.3389/fpls.2022.1096457 2022
37993454 Loss-of-function of an α-SNAP gene confers resistance to soybean cyst nematode Nature Communications 10.1038/s41467-023-43295-y 2023
40593778 Natural variation in histone demethylase GmLDL2 confers flowering time divergence for geographical expansion in soybean Nature Communications 10.1038/s41467-025-61328-6 2025
39087631 Conserved features and diversity attributes of chimeric RNAs across accessions in four plants Plant Biotechnology Journal 10.1111/pbi.14437 2024
40652552 Epigenetic regulation modulates seasonal temperature‐dependent growth of soybean in southern China Plant Biotechnology Journal 10.1111/pbi.70243 2025
38918950 TWAS facilitates gene-scale trait genetic dissection through gene expression, structural variations, and alternative splicing in soybean Plant Communications 10.1016/j.xplc.2024.101010 2024
37871213 Dynamics of cis -regulatory sequences and transcriptional divergence of duplicated genes in soybean Proceedings of the National Academy of Sciences of the United States of America 10.1073/pnas.2303836120 2023
40369104 Chromosome-level genome assembly of a high-yield Chinese soybean variety Mengdou1137 unlocks genetic potential of disease and lodging resistance Theoretical and Applied Genetics 10.1007/s00122-025-04881-4 2025
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
Chinese Academy of Sciences (CAS) N/A
提交者 Liu Yucheng (ychliu@genetics.ac.cn)
提交单位 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
提交日期 2019-12-14

项目包含数据信息

资源名称 描述
BioSample (3158)  show -
GSA (7)  show -