Accession PRJCA015108
Title Oryza rufipogon Genome sequencing and assembly
Relevance Agricultural
Data types Whole genome sequencing
Phenotype or Genotype
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads
Genome sequencing
Assembly
Organisms Oryza sativa
Oryza sativa Japonica Group
Oryza rufipogon
Description a gap-free genome assembly and annotation for O. rufipogon integrating HiC, BioNano,Nanopore and HiFi techniques.
Sample scope Multiisolate
Release date 2023-02-22
Publication
PubMed ID Article title Journal name DOI Year
38811581 Haplotype-resolved gapless genome and chromosome segment substitution lines facilitate gene identification in wild rice Nature Communications 10.1038/s41467-024-48845-6 2024
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) N/A
Submitter Jingfen Huang (18404984197@163.com)
Organization Institute of Crop Sciences, Chinese Academy of Agricultural Sciences
Submission date 2023-02-21

Project Data

Resource name Description
BioSample (66)  show -
GSA (3) -
CRA009934 RNA-seq data related to salt treatment and rice blast treatment
CRA010031 Nanopore and HiC sequencing of Y476
CRA009982 HiFi subreads of Y476