Accession SAMC1858259
Accession in Other Database GSA-Human: HRS266328
Sample name EPN9_scRNA-seq
Title EPN9
Sample type Human sample
Organism Homo sapiens
Description raw data for sample EPN9_scRNA-seq is under Run accession HRR337412
Attributes *This sample record contains additional controlled-access information that is avaiable from GSA-Human by requesting study HRA001112 in the GSA-Human system.
Release date 2021-09-28
BioProject Accession PRJCA005972
Submitter Xiaoqun  Wang  (xiaoqunwang@ibp.ac.cn)
Organization Institute of Biophysics, Chinese Academy of Sciences
Submission date 2023-06-18

Sample Data

Resource name Description
GSA-Human (1) -
HRA001112  (Controlled Access) Our single-cell RNA-sequencing analyses of three spinal ependymoma subtypes dissected the microenvironmental landscape of spinal ependymomas and revealed tumor-associated macrophage (TAM) subsets with distinct functional phenotypes. CCL2+ TAMs were related to the immune response and exhibited a high capacity for apoptosis, while CD44+ TAMs were associated with tumor angiogenesis. By combining these results with those of scATAC-seq data analysis, we revealed that TEAD1 and EGR3 play roles in regulating the functional diversity of TAMs. We further identified diverse characteristics of both malignant cells and TAMs that might underlie the different malignant degrees of each subtype. Finally, assessment of cell-cell interactions revealed that stromal cells act as extracellular factors that mediate TAM diversity. Overall, our results revealed dual functions of TAMs in tumor progression, providing valuable insights for TAM-targeting immunotherapy.
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