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1:17657616-17657616 5:118861713-118861713 3:53125922-53125922 9:134351343-134351343 17:6902760-6902760 11:64882789-64882789 17:37054772-37054772 16:66420885-66420885 4:8616096-8616096 7:37953840-37953840 10:50901938-50901938 10:13653653-13653653 2:231042276-231042276 7:73280020-73280020 9:37974743-37974743 3:50153356-50153356 1:207074905-207074905 2:153405594-153405594 15:64962630-64962630 17:64025331-64025331 2:103095404-103095404 4:140810700-140810700 11:63072310-63072310 8:18258316-18258316 1:158533140-158533140 11:47701528-47701528 11:4869649-4869649 15:101109818-101109818 7:25194753-25194753 7:22202117-22202117 1:227172290-227172290 17:10450816-10450816 8:95690579-95690579 1:117656088-117656088 19:53349850-53349850 20:31466534-31466534 5:64273018-64273018 4:164466824-164466824 22:42416056-42416056 1:147119273-147119273 1:205801872-205801872 3:66419956-66419956 15:27772676-27772676 13:28239970-28239970 6:161137779-161137779 18:28898294-28898294 5:148408101-148408101 1:202304868-202304868 15:42149472-42149472 7:129664312-129664312 2:235950187-235950187 6:54735122-54735122 3:183211906-183211906 20:36841756-36841756 9:15784631-15784631 2:113309473-113309473 17:66364804-66364804 12:58010163-58010163 12:53091566-53091566 5:141336264-141336264 3:124351424-124351424 19:37482151-37482151 8:110455321-110455321 16:72156842-72156842 8:53586706-53586706 10:45430462-45430462 7:48450157-48450157 1:228412308-228412308 3:122056432-122056432 5:169310213-169310213 4:71396989-71396989 20:4880308-4880308 14:51237701-51237701 11:72946020-72946020 16:84203612-84203612 12:123200768-123200768 1:53676448-53676448 4:3039150-3039150 18:60027241-60027241 1:92177938-92177938 12:13716638-13716638 9:107360922-107360922 5:81549216-81549216 14:23549319-23549319 5:150723806-150723806 16:51173559-51173559 16:24202615-24202615 7:23296533-23296533 22:36591380-36591380 17:42398052-42398052 3:35779750-35779750 12:53242440-53242440 8:101586133-101586133 5:38955796-38955796 16:27974487-27974487 1:183085755-183085755 20:31622083-31622083 9:139839904-139839904 4:2341194-2341194 1:167825485-167825485 22:29755888-29755888 16:15818141-15818141 17:18855611-18855611 11:33631423-33631423 17:14005439-14005439 2:25377176-25377176 1:234529552-234529552 9:4564432-4564432 2:75113657-75113657 15:40590134-40590134 15:99478225-99478225 1:103352451-103352451 5:112162854-112162854 12:26784850-26784850 6:56484758-56484758 4:25005193-25005193 7:43917013-43917013 20:36989381-36989381 22:24898310-24898310 20:48259034-48259034 14:64908845-64908845 6:36260858-36260858 19:5455611-5455611 2:208989037-208989037 21:31709691-31709691 3:100617680-100617680 9:130206762-130206762 18:28734749-28734749 4:187534375-187534375 5:147286054-147286054 3:53700550-53700550 20:44184375-44184375 6:152464839-152464839 4:2744087-2744087 10:50184949-50184949 5:149907533-149907533 14:31582526-31582526 1:45973928-45973928 11:76917220-76917220 18:31320229-31320229 15:78390414-78390414 17:6515454-6515454 2:33447202-33447202 12:21331625-21331625 17:80863857-80863857 2:48921375-48921375 8:124696867-124696867 14:23374435-23374435 1:207851611-207851611 20:52786219-52786219 1:201060865-201060865 10:91352966-91352966 9:129854199-129854199 18:43316538-43316538 4:17818885-17818885 5:31317529-31317529 19:48525507-48525507 15:99653800-99653800 17:38062217-38062217 3:47043538-47043538 12:69646914-69646914 3:122288210-122288210 2:205829991-205829991 17:4856580-4856580 22:43830996-43830996 10:124089036-124089036 13:32776603-32776603 1:62594593-62594593 10:128974621-128974621 5:180582604-180582604 20:23017082-23017082 9:123780005-123780005 6:147136244-147136244 5:169267784-169267784 3:4403837-4403837 10:75632760-75632760 19:53959343-53959343 7:17854532-17854532 12:119662572-119662572 8:6690276-6690276 12:102079418-102079418 20:48524827-48524827 1:157557701-157557701 10:101912064-101912064 10:124457906-124457906 2:30976058-30976058 21:47608580-47608580 15:90623052-90623052 8:61488824-61488824 1:13802325-13802325 13:46170609-46170609 10:91178000-91178000 19:56477710-56477710 8:142152442-142152442 7:150893629-150893629 9:136291063-136291063 19:39914748-39914748 19:19023853-19023853 11:133805585-133805585 19:6466482-6466482 3:89521693-89521693 3:191100561-191100561 19:54664752-54664752 4:121958091-121958091 7:138732497-138732497 8:72966002-72966002 11:10786142-10786142 9:73151970-73151970 12:49048738-49048738 14:75538217-75538217 17:76817090-76817090 19:12692001-12692001 20:744450-744450 21:43161877-43161877 14:21785790-21785790 2:48808594-48808594 3:44948479-44948479 1:229738170-229738170 3:109052732-109052732 3:132218623-132218623 1:180905448-180905448 2:218682771-218682771 2:70188676-70188676 7:18066569-18066569 8:3253768-3253768 16:68344696-68344696 4:154624656-154624656 3:44884647-44884647 8:104337096-104337096 17:3628362-3628362 18:56204932-56204932 1:248039713-248039713 8:125498547-125498547 8:2054171-2054171 20:20033380-20033380 7:99757612-99757612 16:79245820-79245820 3:69126495-69126495 16:30018500-30018500 17:3436080-3436080 12:52822258-52822258 8:130760850-130760850 19:44417575-44417575 18:6889973-6889973 9:139289825-139289825 11:73785326-73785326 2:158443889-158443889 7:6063283-6063283 3:40286017-40286017 20:44452697-44452697 1:24406647-24406647 22:19951271-19951271 3:14555216-14555216 22:51009953-51009953 8:17500223-17500223 6:51491884-51491884 10:8006798-8006798 17:8161149-8161149 5:179260213-179260213 5:137708434-137708434 15:84582124-84582124 3:108867128-108867128 4:78987157-78987157 5:176011889-176011889 8:121228679-121228679 16:74670458-74670458 1:201166383-201166383 3:196674749-196674749 17:17179481-17179481 11:104877927-104877927 11:75160575-75160575 9:130475011-130475011 5:78340286-78340286 13:78475313-78475313 9:79324741-79324741 7:24329133-24329133 11:55340379-55340379 11:66331458-66331458 22:30857448-30857448 22:43289473-43289473 22:45749983-45749983 17:72613589-72613589 12:125284748-125284748 19:11230881-11230881 20:44141331-44141331 20:23345844-23345844 20:371972-371972 20:25398790-25398790 20:14306953-14306953 11:65546857-65546857 20:25288632-25288632 11:120989335-120989335 2:49189921-49189921 18:6999628-6999628 13:47469940-47469940 2:234703136-234703136 7:91779971-91779971 15:42434254-42434254 14:65031534-65031534 20:61040951-61040951 1:225533684-225533684 1:156354367-156354367 1:182369233-182369233 1:158450314-158450314 2:234601669-234601669 3:14755572-14755572 11:65733393-65733393 5:34807928-34807928 5:35641582-35641582 2:21232195-21232195 15:89402596-89402596 1:211846876-211846876 9:21816758-21816758 1:181759657-181759657 19:17025292-17025292 10:29822159-29822159 10:116719543-116719543 8:95877787-95877787 12:3749874-3749874 14:23598952-23598952 14:31858209-31858209 14:21623648-21623648 15:78565478-78565478 16:89866043-89866043 17:1704296-1704296 19:57647015-57647015 12:109848567-109848567 13:32360547-32360547 20:43723627-43723627 1:242030151-242030151 22:44489896-44489896 2:71058835-71058835 8:124987478-124987478 1:110998854-110998854 1:205554095-205554095 1:229790048-229790048 1:157668390-157668390 1:160136350-160136350 20:39797465-39797465 2:241979550-241979550 17:3846802-3846802 17:15903602-15903602 2:113089267-113089267 3:134670524-134670524 17:3119767-3119767 17:3324255-3324255 5:73072354-73072354 5:118484804-118484804 12:56825311-56825311 6:42689755-42689755 8:143959250-143959250 4:98893476-98893476 10:97748040-97748040 10:16547058-16547058 10:69933969-69933969 12:124179417-124179417 12:56031273-56031273 12:4737042-4737042 13:31231806-31231806 17:11786951-11786951 3:138329862-138329862 1:156902259-156902259 22:44379838-44379838 3:158388780-158388780 1:158612236-158612236 16:4751045-4751045 14:59939727-59939727 8:27324822-27324822 4:154216710-154216710 17:37922259-37922259 8:25159885-25159885 5:121518309-121518309 1:170521376-170521376 9:7174673-7174673 9:112900199-112900199 12:93150102-93150102 3:44284584-44284584 2:26804247-26804247 15:75131959-75131959 2:191301368-191301368 21:27852724-27852724 17:38935812-38935812 3:193374964-193374964 3:171338237-171338237 17:48603503-48603503 17:45885756-45885756 18:43246156-43246156 1:117617705-117617705 | xargs samtools view -@ 4 -hb [input.bam] | samtools sort -@ 4 -o [output.bam]