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Gene Expression Nebulas (GEN) is a data portal of transcriptomic profiles under various conditions derived entirely from bulk and single-cell RNA-Seq data analysis in multiple species.

Species

297

192 Datasets 3673 Bulk Samples 6823695 Cells

11 Datasets 34 Bulk Samples 1176003 Cells

7 Datasets 18 Bulk Samples 3837235 Cells

4 Datasets 117 Bulk Samples 42129 Cells

4 Datasets 22 Bulk Samples 304 Cells

4 Datasets 30 Bulk Samples 122 Cells

3 Datasets 27 Bulk Samples 59 Cells

3 Datasets 360 Bulk Samples 28773 Cells

2 Datasets 42 Bulk Samples 100 Cells

2 Datasets 5 Bulk Samples 130713 Cells

2 Datasets 21 Bulk Samples 657999 Cells

2 Datasets 18 Bulk Samples 22737 Cells

2 Datasets 20 Bulk Samples 32 Cells

2 Datasets 20 Bulk Samples 11380 Cells

2 Datasets 6 Bulk Samples 55930 Cells

2 Datasets 18 Bulk Samples 32 Cells

2 Datasets 40 Bulk Samples 2520906 Cells

32 Datasets 1060 Bulk Samples 27 Cells

16 Datasets 499 Bulk Samples

8 Datasets 216 Bulk Samples 220188 Cells

5 Datasets 462 Bulk Samples

3 Datasets 78 Bulk Samples

2 Datasets 34 Bulk Samples

2 Datasets 480 Bulk Samples

1 Datasets 44 Bulk Samples

1 Datasets 14 Bulk Samples

1 Datasets 6 Bulk Samples

2 Datasets 12 Bulk Samples 6637 Cells

Dictyostelium discoideum
Cellular slime molds

2 Datasets 8 Bulk Samples 4988 Cells

Plasmodium falciparum
Malaria parasite

2 Datasets 28 Bulk Samples 180 Cells

Online analysis tools implemented on Shiny app

RNA editing profiles of 8 rice datasets, 1 arabidopsis dataset and 1 sorghum dataset were added. [2021-08-05]

Circular RNA expression profiles of 10 human datasets were added. [2021-07-30]

RNA editing and alternative splicing profiles of 10 human datasets were added. [2021-07-18]

Online analysis tools were implemented. [2021-06-29]

Visualization of scRNA-seq profiles was implemented.[2021-06-26]

DEGs of bulk RNA-seq datasets were updated. [2021-06-25]

4 microbe datasets were added. [2021-06-25]

72 plant datasets were added. [2021-06-21]

56 animal datasets were added. [2021-05-10]

193 human scRNA-seq datasets were added. [2020-12-27]

The latest RNA editing and alternative splicing data of human.

PRJNA231202: RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms, and GTPase binding in bipolar disorder

PRJNA487796: Integrated Multi-omic Analysis of Esthesioneuroblastomas Identifies Two Subgroups Linked to Cell Ontogeny

PRJNA615032: Transcriptional response to SARS-CoV-2 infection

PRJNA631753: Spectrum of Viral Load and Host Response Seen in Autopsies of SARS-CoV-2 Infected Lungs

PRJNA258216: Next generation sequencing of human immune cell subsets across diseases

The latest RNA-seq research data on COVID-19.

PRJCA002326: Transcriptome of patients infected with SARS-CoV-2

PRJNA615032: Transcriptional response to SARS-CoV-2 infection

PRJNA631753: Spectrum of Viral Load and Host Response Seen in Autopsies of SARS-CoV-2 Infected Lungs

PRJNA608742: Single-cell landscape of bronchoalveolar immune cells in COVID-19 patients

The latest RNA-seq research data of human lung cancer.

PRJNA431798: RNA Sequencing analysis of different genetically characterized lung cancer cell lines

PRJNA285793: Single-cell RNA sequencing of lung adenocarcinoma patient-derived cells

PRJNA401995: Identification of relationships between Molecular and Imaging Phenotypes in Non-small cell lung cancer using radiogenomics Map

PRJNA575243: Single-cell analyses reveal increasing intratumoral heterogeneity as an essential component of treatment resistance in small cell lung cancer [RNA-Seq]

The latest RNA-seq research data of human breast cancer.

PRJNA327871: Transcriptome profiling of ER+ breast cancer primary tumor and its tumorsphere derivative

PRJNA305054: Single cell RNA sequencing of primary breast cancer.

PRJNA415913: Transcriptomic data of MDA-MB-231 cells adapted to culture in media containing different sugars (glucose or fructose) and cultured as mammospheres

PRJNA471582: Genetic and transcriptional variation alters cancer cell line drug response [MCF7 strain AA]

Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. Nucleic Acids Res 2021. [PMID=34591957]

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res 2021. [PMID=33175170]