| Submission | GVM000558 2023-06-30 Xiamen University |
| Organism | Homo sapiens |
| Version | GRCh38 |
| BioProject | PRJCA017926 |
| Sample numbers | 31174 |
| Abstract | The variation data were extracted from ultra-low-depth whole-genome sequences within 31,774 Chinese pregnant women. These common germline variants were selected with the minimum allele frequency(0.01) of the Chinese population in ChinaMAP, as well as the East Asian population in The Genome Aggregation Database Their genotypes were based on the alleleâs depth as follows: (1) reference allele depth (RD) is greater than 0 and alternate allele depth (AD) equals to 0, homozygote of the reference allele coded as 0; (2) RD and AD are both greater than 0, heterozygote coded as 1; (3) RD equals to 0 and AD is greater than 0, homozygote of the alternate allele coded as 2. Finally, the VCFs were converted to HAPMAP format by run_pipeline.pl of tassel-5-standalone. |
| Data Accessibility: | Controlled access |
| Release date | 2023-06-30 |
| Available data | |
| data submitter: zhou_yulin@126.com | |
| 1.MAF0.01.hmp.txt.gz | |
| 2.MAF0.01.hmp.txt.gz | |
| 3.MAF0.01.hmp.txt.gz | |
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| 21.MAF0.01.hmp.txt.gz | |
| 22.MAF0.01.hmp.txt.gz | |
