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GVM
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Genome Assembly
Technology
Whole Genome Sequence
Position and Type
Variant ID
(e.g.SBI01S186)
dbSNP rsid
(e.g.rs375931351)
Reference Location
(e.g.1:1000-2000)
Variation Type
All
SNP
InDel
Consequence Type
Gene
MAF
Clinvar
OMIM
GWAS-Catalog
G2P
Pfam
HIGH
MODERATE
LOW
MODIFIER
Gene ID
(e.g. Os03g0293500)
Upstream
(e.g. 1000) Downstream
(e.g. 2000)
Gene Symbol
(e.g. PAIR1,LOC_Os03g01590,OSJNBa0009C08.13)
Gramene ID
(e.g. )
UniprotKB
(e.g. )
Biotype
mRNA
rRNA
miRNA
Ontology Term
(e.g. )
Ontology Key Words
(e.g. )
MAF
>=
<=
=
(0-0.5)
Effect
affects
benign
likely benign
likely pathogenic
pathogenic
uncertain significance
association
drug response
not reported for simple variant
protective
risk factor
other
Initial
A(617)
B(256)
C(790)
D(383)
E(256)
F(264)
G(261)
H(1215)
I(179)
J(50)
K(49)
L(264)
M(659)
N(201)
O(147)
P(540)
Q(2)
R(186)
S(485)
T(189)
U(37)
V(65)
W(60)
X(25)
Y(4)
Z(9)
Digit(29)
Other(3)
Initial
A(550)
B(245)
C(777)
D(300)
E(255)
F(200)
G(278)
H(1302)
I(136)
J(40)
K(36)
L(256)
M(708)
N(211)
O(142)
P(472)
R(189)
S(442)
T(206)
U(29)
V(66)
W(63)
X(14)
Y(2)
Z(2)
Digit(36)
Ontology
immune system disease(EFO_0000540)
body weights and measures(EFO_0004324)
cancer(EFO_0000311)
cardiovascular disease(EFO_0000319)
cardiovascular measurement(EFO_0004298)
digestive system disease(EFO_0000405)
hematological measurement(EFO_0004503)
inflammatory biomarker measurement(EFO_0004872)
lipid or lipoprotein measurement(EFO_0005105)
liver enzyme measurement(EFO_0004582)
metabolic disease(EFO_0000589)
nervous system disease(EFO_0000618)
response to drug(GO_0042493)
other
growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield
Pfam Accession
(e.g. PF13853.5)
Pfam Name
(e.g. Peptidase_S28)
Protein Id
(e.g. ENSBTAP00000054136)
Setting Properties
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