The Genome Variation Map (GVM) is a public data repository of genome variations, including single nucleotide polymorphisms and small insertions and deletions, with particular focuses on human as well as cultivated plants and domesticated animals.
All species with genomic variants
Featured genomes
Data Statistics







How to Cite

When you have successfully submitted data to GVM, please consider to use the following words to describe data deposition in your manuscript.

The variation data reported in this paper has been deposited in the Genome Variation Map [1] in National Genomics Data Center [2], China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences, under accession number GVMXXXXXX that can be publicly accessible at

1. Genome Variation Map: a worldwide collection of genome variations across multiple species. Nucleic Acids Res 2021, 49(D1):D1186-D1191.[PMID=33170268].
2. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res 2021, 49(D1):D18-D28. [PMID=33175170].
3. GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. Nucleic Acids Res 2020, 48(D1):D927-D932.[PMID=31566222].
4. Genome Variation Map: a data repository of genome variations in BIG Data Center. Nucleic Acids Res 2018, 46(D1):D944-D949.[PMID=29069473].

dbSNP download link

Data Submission

Deposit data into GVM

Problems or Questions?

If you have any question or would like to give us any suggestion/comment or report a bug, please feel free to contact us.


QQ group: 468638108

Variants related resources

GWAS Atlas
European Variation Archive(EVA)
● NCBI-based platforms:


  A total of 27,849,593 SNPs and 2,137,083 Indels derived from 190 Capsicum annuum (Pepper) accessions are integrated into GVM (2020-08-20)