1. GVM / All Submission / GVM000823
Submission GVM000823
2024-08-06
Zhongshan Hospital Fudan University
OrganismHomo sapiens
Version GRCh37
BioProjectPRJCA028841
Backup Accession2024BAT01120
Sample numbers76
Abstract

ctDNA (30 ng) from plasma samples were processed to generate bar-coded libraries according to manufacturer instructions. Then exons were captured using custom-designed probes.DNA sequencing was performed on sequencing system . Genomic alterations including base substitutions, short insertions and deletions, copy number alterations, and gene fusions were detected using a customized analysis pipeline which is modified from The Genome Analysis Tool kit.

Data Accessibility: Open access
Release date2024-09-04
Available data
CNS0972050.RC0050_20P3288253_20B3288253.vcf.gz       http    ftp
CNS0972051.RC0050_20P3288242-3_20B3288242.vcf.gz       http    ftp
CNS0972052.RC0050_20P3288247_20B3288247.vcf.gz       http    ftp
CNS0972053.RC0050_20P3288246_20B3288246.vcf.gz       http    ftp
CNS0972054.RC0050_20P3288243-3_20B3288243.vcf.gz       http    ftp
CNS0972055.RC0050_20P3288252_20B3288252.vcf.gz       http    ftp
CNS0972056.RC0050_20P3287238-3_20B3287238.vcf.gz       http    ftp
CNS0972057.RC0050_20P3288240-3_20B3288240.vcf.gz       http    ftp
CNS0972058.RC0050_20P3288237-3_20B3288237.vcf.gz       http    ftp
CNS0972059.RC0050_20P3288236-3_20B3288236.vcf.gz       http    ftp
CNS0972060.RC0050_20P3288234-3_20B3288234.vcf.gz       http    ftp
CNS0972061.RC0050_20P3288188-3_20B3288188.vcf.gz       http    ftp
CNS0972062.RC0050_20P3288187-1_20B3288187.vcf.gz       http    ftp
CNS0972063.RC0050_20P3288186-3_20B3288186.vcf.gz       http    ftp
CNS0972064.RC0050_20P3288251_20B3288251.vcf.gz       http    ftp
CNS0972065.RC0050_22P29847102-3_22B29847102.vcf.gz       http    ftp
CNS0972066.RC0050_22P29847103-3_22B29847103.vcf.gz       http    ftp
CNS0972067.RC0050_22P29847105-3_22B29847105.vcf.gz       http    ftp
CNS0972068.RC0050_22P29847104-3_22B29847104.vcf.gz       http    ftp
CNS0972069.RC0050_22P29847106-3_22B29847106.vcf.gz       http    ftp
CNS0972070.RC0050_22P29847107-3_22B29847107.vcf.gz       http    ftp
CNS0972071.RC0050_21P19518218-1_21B19518218.vcf.gz       http    ftp
CNS0972072.RC0050_21P19518217-1_21B19518217.vcf.gz       http    ftp
CNS0972073.RC0050_21P19518216-1_21B19518216.vcf.gz       http    ftp
CNS0972074.RC0050_22P29847111-3_22B29847111.vcf.gz       http    ftp
CNS0972075.RC0050_22P29847112-3_22B29847112.vcf.gz       http    ftp
CNS0972076.RC0050_20P3288244-3_20B3288244.vcf.gz       http    ftp
CNS0972077.RC0050_22P29847113-3_22B29847113.vcf.gz       http    ftp
CNS0972078.RC0050_22P29847114-3_22B29847114.vcf.gz       http    ftp
CNS0972079.RC0050_22P29847115-3_22B29847115.vcf.gz       http    ftp
CNS0972080.RC0050_22P29847116-3_22B29847116.vcf.gz       http    ftp
CNS0972081.RC0050_22P29847117-3_22B29847117.vcf.gz       http    ftp
CNS0972082.RC0050_22P29847118-3_22B29847118.vcf.gz       http    ftp
CNS0972083.RC0050_22P29847119-3_22B29847119.vcf.gz       http    ftp
CNS0972084.RC0050_21P19518205-1_21B19518205.vcf.gz       http    ftp
CNS0972085.RC0050_21P19518204-1_21B19518204.vcf.gz       http    ftp
CNS0972086.RC0050_20P3288250_20B3288250.vcf.gz       http    ftp
CNS0972087.RC0050_20P3288249-3_20B3288249.vcf.gz       http    ftp
CNS0972088.RC0050_20P3288248-3_20B3288248.vcf.gz       http    ftp
CNS0972089.RC0050_20P3288184-3_20B3288184.vcf.gz       http    ftp
CNS0972090.RC0050_20P3288239-3_20B3288239.vcf.gz       http    ftp
CNS0972091.RC0050_20P3288185-3_20B3288185.vcf.gz       http    ftp
CNS0972092.RC0050_20P3288182-3_20B3288182.vcf.gz       http    ftp
P1.DX0503.22S29847076_22B29847076.snv.vcf.gz       http    ftp
P2.DX0503.22S29847077_22B29847077.snv.vcf.gz       http    ftp
P6.DX0503.22S29847079_22B29847079.snv.vcf.gz       http    ftp
P7.DX0503.22S29847080_22B29847080.snv.vcf.gz       http    ftp
P9.DX0503.22S29847082_22B29847082.snv.vcf.gz       http    ftp
P10.DX0503.22S29847088_22B29847088.snv.vcf.gz       http    ftp
P11.DX0503.22S29847083_22B29847083.snv.vcf.gz       http    ftp
P16.DX0503.22S29847087_22B29847087.snv.vcf.gz       http    ftp
P22.DX0503.22S29847091_22B29847091.snv.vcf.gz       http    ftp
P23.DX0503.22S29847093_22B29847093.snv.vcf.gz       http    ftp
P25.DX0503.22S29847095_22B29847095.snv.vcf.gz       http    ftp
P26.DX0503.22S29847096_22B29847096.snv.vcf.gz       http    ftp
P28.DX0503.22S29847098_22B29847098.snv.vcf.gz       http    ftp
P29.DX0503.22S29847099_22B29847099.snv.vcf.gz       http    ftp
P32.DX0503.22S29847102_22B29847102.snv.vcf.gz       http    ftp
P35.DX0503.22S29847105_22B29847105.snv.vcf.gz       http    ftp
P36.DX0503.22S29847104_22B29847104.snv.vcf.gz       http    ftp
P38.DX0503.22S29847106_22B29847106.snv.vcf.gz       http    ftp
P41.DX0503.22S29847107_22B29847107.snv.vcf.gz       http    ftp
P43.DX0503.22S29847109_22B29847109.snv.vcf.gz       http    ftp
P45.DX0503.22S29847111_22B29847111.snv.vcf.gz       http    ftp
P46.DX0503.22S29847112_22B29847112.snv.vcf.gz       http    ftp
P51.DX0503.22S29847114_22B29847114.snv.vcf.gz       http    ftp
P52.DX0503.22S29847115_22B29847115.snv.vcf.gz       http    ftp
P54.DX0503.22S29847117_22B29847117.snv.vcf.gz       http    ftp
P55.DX0503.22S29847118_22B29847118.snv.vcf.gz       http    ftp
P56.DX0503.22S29847119_22B29847119.snv.vcf.gz       http    ftp
P57.DX0503.22S29847120_22B29847120.snv.vcf.gz       http    ftp
P58.DX0503.22S29847121_22B29847121.snv.vcf.gz       http    ftp
POO_01.DX0503.22S29847090_22B29847090.snv.vcf.gz       http    ftp
POO_02.DX0503.22S29847092_22B29847092.snv.vcf.gz       http    ftp
POO_03.DX0503.22S29847100_22B29847100.snv.vcf.gz       http    ftp
POO_04.DX0503.22S29847089_22B29847089.snv.vcf.gz       http    ftp