• 4.2 Variation ID Nomenclature
  • 4.2.1 SNP & small I/D
    We established the genome sequence variation nomenclature rules in BIGD Genome Variation Maps (GVM) by referencing the Sequence Variation Nomenclature (http://varnomen.hgvs.org).
    To make the description of sequence variants more clearly, we recommend including the species and a string of numbers starting at 1 in the genome sequence variation ID.
             Format: "Three letters short for organism name" + “a string of numbers starting at 1”.
                e.g. osa123456        osa is three letters organism code which is short for rice
                e.g. hsa1        has is short for Homo sapiens (human)
  • 4.2.2 Large I/D (NA)
    Under construction.
  • 4.2.3 CNV (NA)
    Under construction.
  • 4.2.4 SV (NA)
    Under construction.