LncBook a curated knowledgebase of human long non-coding RNAs

Publications

LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Res 2019. [PMID=30329098]

LncBook 2.0: human long non-coding RNA integration and multi-omics annotation (In preparation)

Related publications:

• Community curation and expert curation of human long noncoding RNAs with LncRNAWiki and LncBook. Curr Protoc Bioinformatics 2019.
• Database Resources of the BIG Data Center in 2019. Nucleic Acids Res 2019. [PMID=30365034]
• LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res 2015. [PMID=25399417]

News and Update

11/19/2019 - version 1.2

• Genomic locations, exactly beginning sites, for the single-exon transcripts derived from NONCODE database were corrected, and the related genes’ locations were also modified.

08/29/2019 - version 1.1

• To facilitate overall investigation of various RNAs, a comprehensive RNA reference dataset was created, including lncRNA annotations from LncBook and other RNAs’annotations derived from GENCODE v31.
• Both hg19 (GRCh37) and GRCh38 versions were provided, which are freely available in the download page.

07/02/2019 - version 1.1

• 1196 redundant lncRNA transcripts removed
• Genomic annotations of 1046 lncRNA transcripts updated
• Erroneous gene locations corrected
• TS lncRNAs of specific tissues can be accessed in expression page
• Protocol paper published in Current Protocols in Bioinformatics
• Data imported to RNAcentral release 12

06/20/2019 - version 1.0

• Protocol paper published in Current Protocols in Bioinformatics

Global Visitors

Related Resources

LncRNAWiki 1.0

LncRNAWiki 2.0

LncBook 2.0

LncExpDB

LGC