LncBook accommodates a high-quality collection of 95,243 human lncRNA genes and 323,950 lncRNA transcripts, and incorporates their abundant annotations at different omics levels, thereby enabling users to decipher functional signatures of lncRNAs in human diseases and different biological contexts.
Tools
Publications:
News & Updates:
09/14/2024 - version 2.1 was released. New!
- Integrating newly identified lncRNAs from 10 expert databases and by identifying full-length lncRNA transcripts using 94 PacBio long-read RNA sequencing datasets. However v2.1 is ongoding and unstable, so please use the v2.0 for your analysis.
- This effort has led to a significant increase of lncRNA number to 526,318 from 323,950 in version 2.0.
04/15/2024 - Fix the inconsistency between the downloaded file and the content of the Genes page.
06/13/2022 - LncBook 2.0 was released
03/10/2020 - version 1.9
- LncRNA transcripts were integrated from 8 resources, including LncBook v1.2, GENCODE, RefLnc, NONCODE, CHESS, FANTOM, BIGTranscriptome and MiTranscriptome and curated by a series of strict processes.
11/19/2019 - version 1.2
- Genomic locations, exactly beginning sites, for the single-exon transcripts derived from NONCODE database were corrected, and the related genes’ locations were also modified.
08/29/2019 - version 1.1
- To facilitate overall investigation of various RNAs, a comprehensive RNA reference dataset was created, including lncRNA annotations from LncBook and other RNAs’annotations derived from GENCODE v31.
- Both hg19 (GRCh37) and GRCh38 versions were provided, which are freely available in the download page.
07/02/2019 - version 1.1
- 1196 redundant lncRNA transcripts removed
- Genomic annotations of 1046 lncRNA transcripts updated
- Erroneous gene locations corrected
- TS lncRNAs of specific tissues can be accessed in expression page
- Data imported to RNAcentral release 12
06/20/2019 - version 1.0
- Protocol paper published in Current Protocols in Bioinformatics
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