| Sample Name | Data Resource | Description | BioProject ID | Project ID | Sample ID | Experiment ID | Status | Submission Date | Last Update Date | Donor ID | Species | Tissue/Cell Line | Cell Type | Source Name | Strain | Breed | Cultivar | Sex | Age | Healthy Condition | Disease State | Development Stage | Genotype | Treatment | Knockout | Resistance Phenotype | Growth Protocol | Treatment Protocol | Extraction protocol | Construction Protocol | Library Strategy | Library Source | Library Selection | Layout | Platform | Quality Assessment | Mapping Rate (%) | Uniquely Mapping Rate (%) | Genome Coverage (%) | Cytosine Coverage (%) | Conversion Rate (%) | Mapped Read Depth | Genome Version for Mapping | Genome Version for Annotation | View In JBrowse | CpG Island | Biological Process |
|---|
Quality Assessment
Quality control is performed based on criteria listed in the table. The green
represents “pass”, while the red represents “fail”. Mouse-over to view details.
In the Samples
interface, you can enter customized cut off values to filter samples that meet the criteria.
| Mapping rate | Unique mapping rate | Genome coverage | Cytosine Coverage | Conversion rate | Mapped Read Depth | |
|---|---|---|---|---|---|---|
| Green | >= 80% | >= 65% | >= 80% | >= 80% | >= 99.5% | >= 20 |
| Red | < 80% | < 65% | < 80% | < 80% | < 99.5% | < 20 |