Toggle navigation
Data Resources
Computing Analysis
Data Network
Standards
Toggle navigation
Home
Transcription
Bulk Transcriptome
Single Cell Transcriptome
Methylation
Genome
Assembly
Gene
GeneTrace
Variation
Cross-Species
Cross-Species Expression
Cross-Species Variation
Disease expression
Homolog
JBrowse
Disease
Tool
Tool category
BLASTN
BLASTP
TBLASTN
BLASTX
Help
NHP Atlas
Non-human primate database
Home
Transcription
PRJNA218629_cja
Dataset Information
PRJNA218629_cja
[
Origins and functional evolution of Y chromosome gene repertoires across the class Mammalia
]
BioProject ID:
PRJNA218629
Original Project ID:
GSE50747
c
Download
Note:
Gene Expression Profiles
Download Gene Expression Profiles
Reference Genome:
White_tufted_ear marmoset (mCalJac1.pat.X)
Genome Annotation:
White_tufted_ear marmoset (mCalJac1.pat.X)
Data Processing:
Read filtering: Fastp v0.20.0
Strandness of RNA-seq library: RseQC v2.6.4
Read mapping: STAR v2.7.1a
Sample Display columns
Sample ID
Sample Name
Tissue
Disease
Ethnicity/Country
Gender
Development Stage
GSE ID
Source Name
Race/Breed/Strain
Age
Cell subtype
Mutation
Platform
Unique-Mapping Rate
Coverage Rate
Show
5
10
entries
Search:
Sample ID
Sample Name
Tissue
Disease
Ethnicity/Country
Gender
Deveopment Stage
Sample ID
Sample Name
Tissue
Disease
Ethnicity/Country
Gender
Deveopment Stage
Loading...
Processing...
Showing 0 to 0 of 0 entries
Previous
Next
Expression Profiles Visualization
Gene Expression
Differentially Expression
Gene Expression Level
Select Genes...
Heatmap
Boxplot
Differentially Analysis Group
condition1
cerebellum
cerebellum
frontalcortex
heart
kidney
liver
ovary
VS
condition2
frontalcortex
frontalcortex
heart
kidney
liver
ovary
testis
Submit
Loading
DEGs Heatmap
DEGs Table
Show
5
10
25
50
5
5
10
25
50
entries
Search:
Ensemble ID
Gene Symbol
logFC
AveExpr
t-statistic
P.Value
adj.P.Val
Regulation
ENSCJAG00000000017
SLC29A4
2.518
2.884
6.035
0.0001001
0.003944
up
ENSCJAG00000000086
KCNAB2
-1.497
5.496
-4.925
0.0005091
0.01210
down
ENSCJAG00000000101
CHD5
-2.599
2.724
-6.186
0.00008125
0.003458
down
ENSCJAG00000000106
DRD5
-6.014
-3.627
-6.330
0.00006683
0.003009
down
ENSCJAG00000000110
ROBO2
-2.418
1.819
-4.650
0.0007825
0.01623
down
Showing 1 to 5 of 1,399 entries
Previous
1
2
3
4
5
…
280
Next