| Title | Spatial Transcriptomics for developing mouse brain (H&E image set) |
|---|---|
| Description | Here, we collected mouse brains at embryonic days E13.5, E15.5, E16.5, E17.5 and neonatal day P0 from wild-type C57 stain. The spatial transcriptomics libraries were constructed by using 10X Genomics VIsium Spatial Gene Expression Reagent kit.The omic dataset is for corresponding hematoxylin & eosin stain (H&E) images. |
| Organism | Mus musculus |
| Data Type | Other Type of Image Data |
| Data Accessibility | Open-access |
| BioProject | PRJCA010498 |
| Release Date | 2022-11-28 |
| Submitter | Cheng Peng (chengpeng@ynu.edu.cn) |
| Organization | Yunnan University |
| Submission Date | 2022-07-14 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX001298-01 | E13.5_rep1-HE.zip | 1 | Other Type of Image Data | 38.0 MB | zip | |
| OMIX001298-02 | E13.5_rep2-HE.zip | 1 | Other Type of Image Data | 28.9 MB | zip | |
| OMIX001298-03 | E15.5_rep1-HE.zip | 1 | Other Type of Image Data | 32.2 MB | zip | |
| OMIX001298-04 | E15.5_rep2-HE.zip | 1 | Other Type of Image Data | 21.5 MB | zip | |
| OMIX001298-05 | E16.5_rep1-HE | 1 | Other Type of Image Data | 34.2 MB | zip | |
| OMIX001298-06 | E16.5_rep2-HE.zip | 1 | Other Type of Image Data | 25.3 MB | zip | |
| OMIX001298-07 | E17.5_rep1-HE.zip | 1 | Other Type of Image Data | 55.7 MB | zip | |
| OMIX001298-08 | E17.5_rep2-HE.zip | 1 | Other Type of Image Data | 54.9 MB | zip | |
| OMIX001298-09 | P0_rep1-HE.zip | 1 | Other Type of Image Data | 49.0 MB | zip | |
| OMIX001298-10 | P0_rep2-HE.zip | 1 | Other Type of Image Data | 51.0 MB | zip |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| The spatiotemporal dynamics of spatially variable genes in developing mouse brain revealed by a novel computational scheme | Cell Death Discovery | 2023-07 | OMIX001298 OMIX001319 | Deposit |
| Spatially tuneable multi-omics sequencing using light-driven combinatorial barcoding of molecules in tissues | bioRxiv | 2024-05 | OMIX001298 | Deposit |