| Title | Human embryonic lung single-cell transcriptome data and spatial transcriptome data |
|---|---|
| Description | Single-cell transcriptome profiles of early lung development of human embryos weeks 4-8 post-fertilization were obtained by 10x Genomics Chromium platform. Spatial transcriptomic data of 6 week's lung tissue sections were by 10x Visium technique. Single-cell transcriptome profiles of mouse enbryonic lung development from E12-E14 were obtained by 10x Genomics Chromium platform. |
| Organism | Homo sapiens |
| Data Type | Expression Profiling |
| Data Accessibility | Open-access |
| BioProject | PRJCA015245 |
| Release Date | 2024-06-20 |
| Submitter | Jiekai Chen (chen_jiekai@gibh.ac.cn) |
| Organization | Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences |
| Submission Date | 2023-02-28 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX003147-06 | Human embryonic lung spatial transcriptome data (sample 1, week 6) | 1 | Expression Profiling | 86.17 MB | h5ad | |
| OMIX003147-07 | Human embryonic lung spatial transcriptome data (sample 2, week 6) | 1 | Expression Profiling | 82.08 MB | h5ad | |
| OMIX003147-08 | Mouse embryonic lung single-cell transcriptome normal data (E12-E14) | 1 | Expression Profiling | 62.06 MB | h5ad | |
| OMIX003147-09 | Human embryonic lung single-cell transcriptome normal data | 1 | Expression Profiling | 5.13 GB | h5ad | |
| OMIX003147-10 | Human embryonic lung single-cell transcriptome counts data | 1 | Expression Profiling | 5.02 GB | h5ad | |
| OMIX003147-11 | Human embryonic lung single-cell transcriptome spliced data | 1 | Expression Profiling | 4.19 GB | h5ad | |
| OMIX003147-12 | Human embryonic lung single-cell transcriptome unspliced data | 1 | Expression Profiling | 3.31 GB | h5ad | |
| OMIX003147-13 | Human embryonic lung single-cell data annotation | 1 | Expression Profiling | 33.71 MB | csv |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| Single-cell RNA sequencing reveals the developmental program underlying proximal–distal patterning of the human lung at the embryonic stage | Cell Research | 2023-04 | OMIX003147 | Deposit |
| Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity | Nature Communications | 2024-07 | OMIX003147 | Secondary use |
| Novel porcine model reveals two distinct LGR5 cell types during lung development and homeostasis | American Journal of Respiratory Cell and Molecular Biology | 2024-11 | OMIX003147 | Secondary use |