| Title | Spatiotemporal transcriptomic atlas reveals dynamic characteristics and key regulators of planarian regeneration |
|---|---|
| Description | The counts data used in this study. |
| Organism | Schmidtea mediterranea |
| Data Type | Expression Profiling |
| Data Accessibility | Open-access |
| BioProject | PRJCA011425 |
| Release Date | 2023-04-27 |
| Submitter | yang ying (yingyang@big.ac.cn) |
| Organization | Beijing Institute of Genomics |
| Submission Date | 2023-04-25 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX003867-01 | singlecell_h5ad | 3 | Expression Profiling | 444.23 MB | zip | |
| OMIX003867-02 | Seurat_Visium | 6 | Expression Profiling | 3.94 GB | zip | |
| OMIX003867-03 | Scanpy_Visium | 6 | Expression Profiling | 760.66 MB | zip |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| Spatiotemporal transcriptomic atlas reveals the dynamic characteristics and key regulators of planarian regeneration | Nature Communications | 2023-06 | OMIX003867 OMIX003889 | Deposit |
| STIFT: spatiotemporal transcriptomics integration through spatially informed multi-timepoint bridging | Briefings in Bioinformatics | 2025-11 | OMIX003867 | Secondary use |
| STASCAN deciphers fine-resolution cell distribution maps in spatial transcriptomics by deep learning | Genome Biology | 2024-10 | OMIX003889 OMIX003867 | Deposit |