OMIX004167

1Summary
Title 30 spatial transcriptome data and 6 scRNA-seq data from 23 breast cancer patients
Description The 30 tumor tissue slides from 23 breast cancer patients were conducted spatial transcriptome sequencing (stereo-seq of BGl), and tumor tissues from six breast cancer patients were conducted single-cell RNA-sequencing (C4 of BGl)
Organism Homo sapiens
Data Type Expression Profiling
Data Accessibility Controlled-access
BioProject PRJCA017213
Release Date 2025-03-18
Submitter Nan Sun (sunnan@cicams.ac.cn)
Organization Cancer Hospital, Chinese Academy of Medical Sciences
Submission Date 2023-05-25
Request for this Data
2Files & Download

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File ID File Title Number/Samples File Type File Size File Suffix Download
OMIX004167-01 Bin 1 size gem data of NCC-BR20 sample 1 Expression Profiling 402.16 MB gem.gz Controlled
OMIX004167-02 Bin 1 size gem data of NCC-BR10 sample 1 Expression Profiling 741.64 MB gem.gz Controlled
OMIX004167-03 Bin 1 size gem data of NCC-BR7 sample 1 Expression Profiling 1.1 GB gem.gz Controlled
OMIX004167-04 Bin 1 size gem data of NCC-BR19 sample 1 Expression Profiling 379.7 MB gem.gz Controlled
OMIX004167-05 Bin 1 size gem data of NCC-BR12 sample 1 Expression Profiling 2.24 GB gem.gz Controlled
OMIX004167-06 Bin 1 size gem data of NCC-LN6 sample 1 Expression Profiling 1.06 GB gem.gz Controlled
OMIX004167-07 Bin 1 size gem data of NCC-BR22 sample 1 Expression Profiling 2.92 GB gem.gz Controlled
OMIX004167-08 Bin 1 size gem data of NCC-LN23 sample 1 Expression Profiling 770.86 MB gem.gz Controlled
OMIX004167-09 Bin 1 size gem data of NCC-BR1 sample 1 Expression Profiling 853.71 MB gem.gz Controlled
OMIX004167-10 Bin 1 size gem data of NCC-LN13 sample 1 Expression Profiling 1.15 GB gem.gz Controlled
OMIX004167-11 Bin 1 size gem data of NCC-BR13 sample 1 Expression Profiling 1.18 GB gem.gz Controlled
OMIX004167-12 Bin 1 size gem data of NCC-BR6 sample 1 Expression Profiling 1.26 GB gem.gz Controlled
OMIX004167-13 Bin 1 size gem data of NCC-BR5 sample 1 Expression Profiling 718.75 MB gem.gz Controlled
OMIX004167-14 Bin 1 size gem data of NCC-BR2 sample 1 Expression Profiling 843.8 MB gem.gz Controlled
OMIX004167-15 Bin 1 size gem data of NCC-BR15 sample 1 Expression Profiling 652.59 MB gem.gz Controlled
OMIX004167-16 Bin 1 size gem data of NCC-BR3 sample 1 Expression Profiling 935.5 MB gem.gz Controlled
OMIX004167-17 Bin 1 size gem data of NCC-BR9 sample 1 Expression Profiling 857.36 MB gem.gz Controlled
OMIX004167-18 Bin 1 size gem data of NCC-LN12 sample 1 Expression Profiling 1.5 GB gem.gz Controlled
OMIX004167-19 Bin 1 size gem data of NCC-BR21 sample 1 Expression Profiling 696.61 MB gem.gz Controlled
OMIX004167-20 Bin 1 size gem data of NCC-BR17 sample 1 Expression Profiling 313.16 MB gem.gz Controlled
OMIX004167-21 Bin 1 size gem data of NCC-BR23 sample 1 Expression Profiling 981.24 MB gem.gz Controlled
OMIX004167-22 Bin 1 size gem data of NCC-BR16 sample 1 Expression Profiling 725.62 MB gem.gz Controlled
OMIX004167-23 Bin 1 size gem data of NCC-BR8 sample 1 Expression Profiling 931.53 MB gem.gz Controlled
OMIX004167-24 Bin 1 size gem data of NCC-LN5 sample 1 Expression Profiling 713.76 MB gem.gz Controlled
OMIX004167-25 Bin 1 size gem data of NCC-BR11 sample 1 Expression Profiling 460.12 MB gem.gz Controlled
OMIX004167-26 Bin 1 size gem data of NCC-LN10 sample 1 Expression Profiling 812.2 MB gem.gz Controlled
OMIX004167-27 Bin 1 size gem data of NCC-BR18 sample 1 Expression Profiling 1.07 GB gem.gz Controlled
OMIX004167-28 Bin 1 size gem data of NCC-LN18 sample 1 Expression Profiling 806.87 MB gem.gz Controlled
OMIX004167-29 Bin 1 size gem data of NCC-BR14 sample 1 Expression Profiling 867.83 MB gem.gz Controlled
OMIX004167-30 Bin 1 size gem data of NCC-BR4 sample 1 Expression Profiling 303.36 MB gem.gz Controlled
OMIX004167-31 The mask file of ST data of NCC-BR3 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-32 The mask file of ST data of NCC-BR18 sample 1 Expression Profiling 4.19 GB h5 Controlled
OMIX004167-33 The mask file of ST data of NCC-BR20 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-34 The mask file of ST data of NCC-BR10 sample 1 Expression Profiling 4.28 GB h5 Controlled
OMIX004167-35 The mask file of ST data of NCC-LN6 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-36 The mask file of ST data of NCC-LN18 sample 1 Expression Profiling 4.2 GB h5 Controlled
OMIX004167-37 The mask file of ST data of NCC-BR6 sample 1 Expression Profiling 4.31 GB h5 Controlled
OMIX004167-38 The mask file of ST data of NCC-BR22 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-39 The mask file of ST data of NCC-LN10 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-40 The mask file of ST data of NCC-BR19 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-41 The mask file of ST data of NCC-BR1 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-42 The mask file of ST data of NCC-BR9 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-43 The mask file of ST data of NCC-BR17 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-44 The mask file of ST data of NCC-LN23 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-45 The mask file of ST data of NCC-BR11 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-46 The mask file of ST data of NCC-BR16 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-47 The mask file of ST data of NCC-BR13 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-48 The mask file of ST data of NCC-BR7 sample 1 Expression Profiling 4.3 GB h5 Controlled
OMIX004167-49 The mask file of ST data of NCC-BR21 sample 1 Expression Profiling 4.21 GB h5 Controlled
OMIX004167-50 The mask file of ST data of NCC-LN13 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-51 The mask file of ST data of NCC-BR4 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-52 The mask file of ST data of NCC-BR5 sample 1 Expression Profiling 4.28 GB h5 Controlled
OMIX004167-53 The mask file of ST data of NCC-LN12 sample 1 Expression Profiling 4.21 GB h5 Controlled
OMIX004167-54 The mask file of ST data of NCC-BR2 sample 1 Expression Profiling 4.14 GB h5 Controlled
OMIX004167-55 The mask file of ST data of NCC-BR12 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-56 The mask file of ST data of NCC-LN5 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-57 The mask file of ST data of NCC-BR8 sample 1 Expression Profiling 4.3 GB h5 Controlled
OMIX004167-58 The mask file of ST data of NCC-BR23 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-59 The mask file of ST data of NCC-BR14 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-60 The mask file of ST data of NCC-BR15 sample 1 Expression Profiling 4.46 GB h5 Controlled
OMIX004167-61 The cell type anno of bin50 ST data of NCC-BR1 sample 1 Expression Profiling 444.3 KB csv Controlled
OMIX004167-62 The cell type anno of bin50 ST data of NCC-LN5 sample 1 Expression Profiling 404.71 KB csv Controlled
OMIX004167-63 The cell type anno of bin50 ST data of NCC-BR19 sample 1 Expression Profiling 688.36 KB csv Controlled
OMIX004167-64 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR3 sample 1 Expression Profiling 465.41 MB rds Controlled
OMIX004167-65 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR19 sample 1 Expression Profiling 233.74 MB rds Controlled
OMIX004167-66 The cell type anno of bin50 ST data of NCC-BR10 sample 1 Expression Profiling 587.46 KB csv Controlled
OMIX004167-67 The cell type anno of bin50 ST data of NCC-BR18 sample 1 Expression Profiling 647.51 KB csv Controlled
OMIX004167-68 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR4 sample 1 Expression Profiling 164.9 MB rds Controlled
OMIX004167-69 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR1 sample 1 Expression Profiling 352.62 MB rds Controlled
OMIX004167-70 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR9 sample 1 Expression Profiling 382.01 MB rds Controlled
OMIX004167-71 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR11 sample 1 Expression Profiling 249.82 MB rds Controlled
OMIX004167-72 The cell type anno of bin50 ST data of NCC-LN6 sample 1 Expression Profiling 638.35 KB csv Controlled
OMIX004167-73 The cell type anno of bin50 ST data of NCC-BR6 sample 1 Expression Profiling 641.39 KB csv Controlled
OMIX004167-74 The cell type anno of bin50 ST data of NCC-BR3 sample 1 Expression Profiling 763.38 KB csv Controlled
OMIX004167-75 The cell type anno of bin50 ST data of NCC-BR17 sample 1 Expression Profiling 612.12 KB csv Controlled
OMIX004167-76 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR12 sample 1 Expression Profiling 978.48 MB rds Controlled
OMIX004167-77 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN12 sample 1 Expression Profiling 617.12 MB rds Controlled
OMIX004167-78 The cell type anno of bin50 ST data of NCC-LN23 sample 1 Expression Profiling 755.6 KB csv Controlled
OMIX004167-79 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN6 sample 1 Expression Profiling 534.28 MB rds Controlled
OMIX004167-80 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR7 sample 1 Expression Profiling 535.53 MB rds Controlled
OMIX004167-81 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR16 sample 1 Expression Profiling 401.03 MB rds Controlled
OMIX004167-82 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR13 sample 1 Expression Profiling 585.57 MB rds Controlled
OMIX004167-83 The cell type anno of bin50 ST data of NCC-LN12 sample 1 Expression Profiling 395.99 KB csv Controlled
OMIX004167-84 The cell type anno of bin50 ST data of NCC-BR9 sample 1 Expression Profiling 620.15 KB csv Controlled
OMIX004167-85 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR8 sample 1 Expression Profiling 439.17 MB rds Controlled
OMIX004167-86 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN18 sample 1 Expression Profiling 404.73 MB rds Controlled
OMIX004167-87 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR14 sample 1 Expression Profiling 508.21 MB rds Controlled
OMIX004167-88 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR10 sample 1 Expression Profiling 420.94 MB rds Controlled
OMIX004167-89 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR20 sample 1 Expression Profiling 239.1 MB rds Controlled
OMIX004167-90 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN23 sample 1 Expression Profiling 466.55 MB rds Controlled
OMIX004167-91 The cell type anno of bin50 ST data of NCC-BR7 sample 1 Expression Profiling 787.76 KB csv Controlled
OMIX004167-92 The cell type anno of bin50 ST data of NCC-BR15 sample 1 Expression Profiling 720.28 KB csv Controlled
OMIX004167-93 The cell type anno of bin50 ST data of NCC-BR4 sample 1 Expression Profiling 368.98 KB csv Controlled
OMIX004167-94 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR6 sample 1 Expression Profiling 618.23 MB rds Controlled
OMIX004167-95 The cell type anno of bin50 ST data of NCC-BR2 sample 1 Expression Profiling 675.68 KB csv Controlled
OMIX004167-96 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR2 sample 1 Expression Profiling 391.9 MB rds Controlled
OMIX004167-97 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR21 sample 1 Expression Profiling 455.89 MB rds Controlled
OMIX004167-98 The cell type anno of bin50 ST data of NCC-BR14 sample 1 Expression Profiling 701.97 KB csv Controlled
OMIX004167-99 The cell type anno of bin50 ST data of NCC-BR11 sample 1 Expression Profiling 370.96 KB csv Controlled
OMIX004167-100 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR17 sample 1 Expression Profiling 213.94 MB rds Controlled
OMIX004167-101 The cell type anno of bin50 ST data of NCC-BR8 sample 1 Expression Profiling 596.71 KB csv Controlled
OMIX004167-102 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR18 sample 1 Expression Profiling 513.63 MB rds Controlled
OMIX004167-103 The cell type anno of bin50 ST data of NCC-LN10 sample 1 Expression Profiling 735.83 KB csv Controlled
OMIX004167-104 The cell type anno of bin50 ST data of NCC-LN13 sample 1 Expression Profiling 577.42 KB csv Controlled
OMIX004167-105 The cell type anno of bin50 ST data of NCC-LN18 sample 1 Expression Profiling 706.49 KB csv Controlled
OMIX004167-106 The cell type anno of bin50 ST data of NCC-BR12 sample 1 Expression Profiling 770.41 KB csv Controlled
OMIX004167-107 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR5 sample 1 Expression Profiling 360.48 MB rds Controlled
OMIX004167-108 The cell type anno of bin50 ST data of NCC-BR16 sample 1 Expression Profiling 671.48 KB csv Controlled
OMIX004167-109 The cell type anno of bin50 ST data of NCC-BR22 sample 1 Expression Profiling 681.17 KB csv Controlled
OMIX004167-110 The cell type anno of bin50 ST data of NCC-BR5 sample 1 Expression Profiling 584.19 KB csv Controlled
OMIX004167-111 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR22 sample 1 Expression Profiling 1.14 GB rds Controlled
OMIX004167-112 The cell type anno of bin50 ST data of NCC-BR21 sample 1 Expression Profiling 730.68 KB csv Controlled
OMIX004167-113 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN5 sample 1 Expression Profiling 337.42 MB rds Controlled
OMIX004167-114 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN10 sample 1 Expression Profiling 468.64 MB rds Controlled
OMIX004167-115 The cell type anno of bin50 ST data of NCC-BR20 sample 1 Expression Profiling 675.29 KB csv Controlled
OMIX004167-116 The cell type anno of bin50 ST data of NCC-BR13 sample 1 Expression Profiling 741.51 KB csv Controlled
OMIX004167-117 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR23 sample 1 Expression Profiling 517.51 MB rds Controlled
OMIX004167-118 The cell type anno of bin50 ST data of NCC-BR23 sample 1 Expression Profiling 581.7 KB csv Controlled
OMIX004167-119 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR15 sample 1 Expression Profiling 321.01 MB rds Controlled
OMIX004167-120 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN13 sample 1 Expression Profiling 570.07 MB rds Controlled
OMIX004167-121 Matrix file of scRNA-seq of library 1 of NCC-BR13 sample 1 Expression Profiling 35.02 MB matrix.mtx Controlled
OMIX004167-122 Barcodes file of scRNA-seq of library 2 of NCC-BR13 sample 1 Expression Profiling 13.99 KB tsv Controlled
OMIX004167-123 Barcodes file of scRNA-seq of library 2 of NCC-BR22 sample 1 Expression Profiling 19.93 KB tsv Controlled
OMIX004167-124 Matrix file of scRNA-seq of library 2 of NCC-BR21 sample 1 Expression Profiling 50.97 MB matrix.mtx Controlled
OMIX004167-125 Features file of scRNA-seq of library 1 of NCC-BR13 sample 1 Expression Profiling 156.03 KB tsv Controlled
OMIX004167-126 Features file of scRNA-seq of library 2 of NCC-BR12 sample 1 Expression Profiling 175.86 KB tsv Controlled
OMIX004167-127 Matrix file of scRNA-seq of library 2 of NCC-BR22 sample 1 Expression Profiling 45.49 MB matrix.mtx Controlled
OMIX004167-128 Barcodes file of scRNA-seq of library 2 of NCC-BR21 sample 1 Expression Profiling 23.61 KB tsv Controlled
OMIX004167-129 Barcodes file of scRNA-seq of library 1 of NCC-BR22 sample 1 Expression Profiling 21.08 KB tsv Controlled
OMIX004167-130 Barcodes file of scRNA-seq of library 1 of NCC-BR12 sample 1 Expression Profiling 19.81 KB tsv Controlled
OMIX004167-131 Features file of scRNA-seq of library 2 of NCC-BR23 sample 1 Expression Profiling 173.86 KB tsv Controlled
OMIX004167-132 Features file of scRNA-seq of library 1 of NCC-BR22 sample 1 Expression Profiling 167.56 KB tsv Controlled
OMIX004167-133 Matrix file of scRNA-seq of library 1 of NCC-BR14 sample 1 Expression Profiling 49.15 MB matrix.mtx Controlled
OMIX004167-134 Barcodes file of scRNA-seq of library 1 of NCC-BR13 sample 1 Expression Profiling 14.49 KB tsv Controlled
OMIX004167-135 Barcodes file of scRNA-seq of library 2 of NCC-BR12 sample 1 Expression Profiling 20.73 KB tsv Controlled
OMIX004167-136 Matrix file of scRNA-seq of library 2 of NCC-BR23 sample 1 Expression Profiling 47.09 MB matrix.mtx Controlled
OMIX004167-137 Barcodes file of scRNA-seq of library 1 of NCC-BR23 sample 1 Expression Profiling 22.52 KB tsv Controlled
OMIX004167-138 Barcodes file of scRNA-seq of library 2 of NCC-BR23 sample 1 Expression Profiling 22.19 KB tsv Controlled
OMIX004167-139 Features file of scRNA-seq of library 2 of NCC-BR13 sample 1 Expression Profiling 161.25 KB tsv Controlled
OMIX004167-140 Barcodes file of scRNA-seq of library 2 of NCC-BR14 sample 1 Expression Profiling 23.42 KB tsv Controlled
OMIX004167-141 Features file of scRNA-seq of library 1 of NCC-BR23 sample 1 Expression Profiling 176.22 KB tsv Controlled
OMIX004167-142 Matrix file of scRNA-seq of library 1 of NCC-BR12 sample 1 Expression Profiling 38.32 MB matrix.mtx Controlled
OMIX004167-143 Matrix file of scRNA-seq of library 1 of NCC-BR21 sample 1 Expression Profiling 44.69 MB matrix.mtx Controlled
OMIX004167-144 Matrix file of scRNA-seq of library 2 of NCC-BR14 sample 1 Expression Profiling 48.04 MB matrix.mtx Controlled
OMIX004167-145 Features file of scRNA-seq of library 2 of NCC-BR14 sample 1 Expression Profiling 183.4 KB tsv Controlled
OMIX004167-146 Matrix file of scRNA-seq of library 1 of NCC-BR23 sample 1 Expression Profiling 45.72 MB matrix.mtx Controlled
OMIX004167-147 Features file of scRNA-seq of library 2 of NCC-BR21 sample 1 Expression Profiling 164.87 KB tsv Controlled
OMIX004167-148 Barcodes file of scRNA-seq of library 1 of NCC-BR14 sample 1 Expression Profiling 25.18 KB tsv Controlled
OMIX004167-149 Features file of scRNA-seq of library 2 of NCC-BR22 sample 1 Expression Profiling 164.13 KB tsv Controlled
OMIX004167-150 Matrix file of scRNA-seq of library 2 of NCC-BR12 sample 1 Expression Profiling 39.45 MB matrix.mtx Controlled
OMIX004167-151 Barcodes file of scRNA-seq of library 1 of NCC-BR21 sample 1 Expression Profiling 21.32 KB tsv Controlled
OMIX004167-152 Features file of scRNA-seq of library 1 of NCC-BR14 sample 1 Expression Profiling 187.83 KB tsv Controlled
OMIX004167-153 Features file of scRNA-seq of library 1 of NCC-BR21 sample 1 Expression Profiling 159.59 KB tsv Controlled
OMIX004167-154 Matrix file of scRNA-seq of library 2 of NCC-BR13 sample 1 Expression Profiling 35.86 MB matrix.mtx Controlled
OMIX004167-155 Features file of scRNA-seq of library 1 of NCC-BR12 sample 1 Expression Profiling 171.98 KB tsv Controlled
OMIX004167-156 Matrix file of scRNA-seq of library 1 of NCC-BR22 sample 1 Expression Profiling 48.45 MB matrix.mtx Controlled
3Relevant Publications
Paper Title Journal Name Publish Time Accession Citing Type
Spatially resolved atlas of breast cancer uncovers intercellular machinery of venular niche governing lymphocyte extravasation Nature Communications 2025-04 OMIX004167 Deposit
AF9/KLF2 gene regulatory circuit links histone lactylation to breast cancer metastasis BioRxiv 2025-06 OMIX004167 Deposit

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