OMIX004167

1Summary
Title 30 spatial transcriptome data and 6 scRNA-seq data from 23 breast cancer patients
Description The 30 tumor tissue slides from 23 breast cancer patients were conducted spatial transcriptome sequencing (stereo-seq of BGl), and tumor tissues from six breast cancer patients were conducted single-cell RNA-sequencing (C4 of BGl)
Organism Homo sapiens
Data Type Expression Profiling
Data Accessibility Controlled-access
BioProject PRJCA017213
Release Date 2025-03-18
Submitter Nan Sun (sunnan@cicams.ac.cn)
Organization Cancer Hospital, Chinese Academy of Medical Sciences
Submission Date 2023-05-25
Request for this Data
2Files & Download

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File ID File Title Number/Samples File Type File Size File Suffix Download
OMIX004167-01 Bin 1 size gem data of NCC-BR20 sample 1 Expression Profiling 402.16 MB gem.gz Controlled
OMIX004167-02 Bin 1 size gem data of NCC-BR10 sample 1 Expression Profiling 741.64 MB gem.gz Controlled
OMIX004167-03 Bin 1 size gem data of NCC-BR7 sample 1 Expression Profiling 1.1 GB gem.gz Controlled
OMIX004167-04 Bin 1 size gem data of NCC-BR19 sample 1 Expression Profiling 379.7 MB gem.gz Controlled
OMIX004167-05 Bin 1 size gem data of NCC-BR12 sample 1 Expression Profiling 2.24 GB gem.gz Controlled
OMIX004167-06 Bin 1 size gem data of NCC-LN6 sample 1 Expression Profiling 1.06 GB gem.gz Controlled
OMIX004167-07 Bin 1 size gem data of NCC-BR22 sample 1 Expression Profiling 2.92 GB gem.gz Controlled
OMIX004167-08 Bin 1 size gem data of NCC-LN23 sample 1 Expression Profiling 770.86 MB gem.gz Controlled
OMIX004167-09 Bin 1 size gem data of NCC-BR1 sample 1 Expression Profiling 853.71 MB gem.gz Controlled
OMIX004167-10 Bin 1 size gem data of NCC-LN13 sample 1 Expression Profiling 1.15 GB gem.gz Controlled
OMIX004167-11 Bin 1 size gem data of NCC-BR13 sample 1 Expression Profiling 1.18 GB gem.gz Controlled
OMIX004167-12 Bin 1 size gem data of NCC-BR6 sample 1 Expression Profiling 1.26 GB gem.gz Controlled
OMIX004167-13 Bin 1 size gem data of NCC-BR5 sample 1 Expression Profiling 718.75 MB gem.gz Controlled
OMIX004167-14 Bin 1 size gem data of NCC-BR2 sample 1 Expression Profiling 843.8 MB gem.gz Controlled
OMIX004167-15 Bin 1 size gem data of NCC-BR15 sample 1 Expression Profiling 652.59 MB gem.gz Controlled
OMIX004167-16 Bin 1 size gem data of NCC-BR3 sample 1 Expression Profiling 935.5 MB gem.gz Controlled
OMIX004167-17 Bin 1 size gem data of NCC-BR9 sample 1 Expression Profiling 857.36 MB gem.gz Controlled
OMIX004167-18 Bin 1 size gem data of NCC-LN12 sample 1 Expression Profiling 1.5 GB gem.gz Controlled
OMIX004167-19 Bin 1 size gem data of NCC-BR21 sample 1 Expression Profiling 696.61 MB gem.gz Controlled
OMIX004167-20 Bin 1 size gem data of NCC-BR17 sample 1 Expression Profiling 313.16 MB gem.gz Controlled
OMIX004167-21 Bin 1 size gem data of NCC-BR23 sample 1 Expression Profiling 981.24 MB gem.gz Controlled
OMIX004167-22 Bin 1 size gem data of NCC-BR16 sample 1 Expression Profiling 725.62 MB gem.gz Controlled
OMIX004167-23 Bin 1 size gem data of NCC-BR8 sample 1 Expression Profiling 931.53 MB gem.gz Controlled
OMIX004167-24 Bin 1 size gem data of NCC-LN5 sample 1 Expression Profiling 713.76 MB gem.gz Controlled
OMIX004167-25 Bin 1 size gem data of NCC-BR11 sample 1 Expression Profiling 460.12 MB gem.gz Controlled
OMIX004167-26 Bin 1 size gem data of NCC-LN10 sample 1 Expression Profiling 812.2 MB gem.gz Controlled
OMIX004167-27 Bin 1 size gem data of NCC-BR18 sample 1 Expression Profiling 1.07 GB gem.gz Controlled
OMIX004167-28 Bin 1 size gem data of NCC-LN18 sample 1 Expression Profiling 806.87 MB gem.gz Controlled
OMIX004167-29 Bin 1 size gem data of NCC-BR14 sample 1 Expression Profiling 867.83 MB gem.gz Controlled
OMIX004167-30 Bin 1 size gem data of NCC-BR4 sample 1 Expression Profiling 303.36 MB gem.gz Controlled
OMIX004167-31 The mask file of ST data of NCC-BR3 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-32 The mask file of ST data of NCC-BR18 sample 1 Expression Profiling 4.19 GB h5 Controlled
OMIX004167-33 The mask file of ST data of NCC-BR20 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-34 The mask file of ST data of NCC-BR10 sample 1 Expression Profiling 4.28 GB h5 Controlled
OMIX004167-35 The mask file of ST data of NCC-LN6 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-36 The mask file of ST data of NCC-LN18 sample 1 Expression Profiling 4.2 GB h5 Controlled
OMIX004167-37 The mask file of ST data of NCC-BR6 sample 1 Expression Profiling 4.31 GB h5 Controlled
OMIX004167-38 The mask file of ST data of NCC-BR22 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-39 The mask file of ST data of NCC-LN10 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-40 The mask file of ST data of NCC-BR19 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-41 The mask file of ST data of NCC-BR1 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-42 The mask file of ST data of NCC-BR9 sample 1 Expression Profiling 4.29 GB h5 Controlled
OMIX004167-43 The mask file of ST data of NCC-BR17 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-44 The mask file of ST data of NCC-LN23 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-45 The mask file of ST data of NCC-BR11 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-46 The mask file of ST data of NCC-BR16 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-47 The mask file of ST data of NCC-BR13 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-48 The mask file of ST data of NCC-BR7 sample 1 Expression Profiling 4.3 GB h5 Controlled
OMIX004167-49 The mask file of ST data of NCC-BR21 sample 1 Expression Profiling 4.21 GB h5 Controlled
OMIX004167-50 The mask file of ST data of NCC-LN13 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-51 The mask file of ST data of NCC-BR4 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-52 The mask file of ST data of NCC-BR5 sample 1 Expression Profiling 4.28 GB h5 Controlled
OMIX004167-53 The mask file of ST data of NCC-LN12 sample 1 Expression Profiling 4.21 GB h5 Controlled
OMIX004167-54 The mask file of ST data of NCC-BR2 sample 1 Expression Profiling 4.14 GB h5 Controlled
OMIX004167-55 The mask file of ST data of NCC-BR12 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-56 The mask file of ST data of NCC-LN5 sample 1 Expression Profiling 4.24 GB h5 Controlled
OMIX004167-57 The mask file of ST data of NCC-BR8 sample 1 Expression Profiling 4.3 GB h5 Controlled
OMIX004167-58 The mask file of ST data of NCC-BR23 sample 1 Expression Profiling 4.22 GB h5 Controlled
OMIX004167-59 The mask file of ST data of NCC-BR14 sample 1 Expression Profiling 4.23 GB h5 Controlled
OMIX004167-60 The mask file of ST data of NCC-BR15 sample 1 Expression Profiling 4.46 GB h5 Controlled
OMIX004167-61 The cell type anno of bin50 ST data of NCC-BR1 sample 1 Expression Profiling 444.3 KB csv Controlled
OMIX004167-62 The cell type anno of bin50 ST data of NCC-LN5 sample 1 Expression Profiling 404.71 KB csv Controlled
OMIX004167-63 The cell type anno of bin50 ST data of NCC-BR19 sample 1 Expression Profiling 688.36 KB csv Controlled
OMIX004167-64 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR3 sample 1 Expression Profiling 465.41 MB rds Controlled
OMIX004167-65 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR19 sample 1 Expression Profiling 233.74 MB rds Controlled
OMIX004167-66 The cell type anno of bin50 ST data of NCC-BR10 sample 1 Expression Profiling 587.46 KB csv Controlled
OMIX004167-67 The cell type anno of bin50 ST data of NCC-BR18 sample 1 Expression Profiling 647.51 KB csv Controlled
OMIX004167-68 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR4 sample 1 Expression Profiling 164.9 MB rds Controlled
OMIX004167-69 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR1 sample 1 Expression Profiling 352.62 MB rds Controlled
OMIX004167-70 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR9 sample 1 Expression Profiling 382.01 MB rds Controlled
OMIX004167-71 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR11 sample 1 Expression Profiling 249.82 MB rds Controlled
OMIX004167-72 The cell type anno of bin50 ST data of NCC-LN6 sample 1 Expression Profiling 638.35 KB csv Controlled
OMIX004167-73 The cell type anno of bin50 ST data of NCC-BR6 sample 1 Expression Profiling 641.39 KB csv Controlled
OMIX004167-74 The cell type anno of bin50 ST data of NCC-BR3 sample 1 Expression Profiling 763.38 KB csv Controlled
OMIX004167-75 The cell type anno of bin50 ST data of NCC-BR17 sample 1 Expression Profiling 612.12 KB csv Controlled
OMIX004167-76 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR12 sample 1 Expression Profiling 978.48 MB rds Controlled
OMIX004167-77 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN12 sample 1 Expression Profiling 617.12 MB rds Controlled
OMIX004167-78 The cell type anno of bin50 ST data of NCC-LN23 sample 1 Expression Profiling 755.6 KB csv Controlled
OMIX004167-79 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN6 sample 1 Expression Profiling 534.28 MB rds Controlled
OMIX004167-80 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR7 sample 1 Expression Profiling 535.53 MB rds Controlled
OMIX004167-81 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR16 sample 1 Expression Profiling 401.03 MB rds Controlled
OMIX004167-82 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR13 sample 1 Expression Profiling 585.57 MB rds Controlled
OMIX004167-83 The cell type anno of bin50 ST data of NCC-LN12 sample 1 Expression Profiling 395.99 KB csv Controlled
OMIX004167-84 The cell type anno of bin50 ST data of NCC-BR9 sample 1 Expression Profiling 620.15 KB csv Controlled
OMIX004167-85 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR8 sample 1 Expression Profiling 439.17 MB rds Controlled
OMIX004167-86 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN18 sample 1 Expression Profiling 404.73 MB rds Controlled
OMIX004167-87 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR14 sample 1 Expression Profiling 508.21 MB rds Controlled
OMIX004167-88 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR10 sample 1 Expression Profiling 420.94 MB rds Controlled
OMIX004167-89 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR20 sample 1 Expression Profiling 239.1 MB rds Controlled
OMIX004167-90 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN23 sample 1 Expression Profiling 466.55 MB rds Controlled
OMIX004167-91 The cell type anno of bin50 ST data of NCC-BR7 sample 1 Expression Profiling 787.76 KB csv Controlled
OMIX004167-92 The cell type anno of bin50 ST data of NCC-BR15 sample 1 Expression Profiling 720.28 KB csv Controlled
OMIX004167-93 The cell type anno of bin50 ST data of NCC-BR4 sample 1 Expression Profiling 368.98 KB csv Controlled
OMIX004167-94 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR6 sample 1 Expression Profiling 618.23 MB rds Controlled
OMIX004167-95 The cell type anno of bin50 ST data of NCC-BR2 sample 1 Expression Profiling 675.68 KB csv Controlled
OMIX004167-96 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR2 sample 1 Expression Profiling 391.9 MB rds Controlled
OMIX004167-97 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR21 sample 1 Expression Profiling 455.89 MB rds Controlled
OMIX004167-98 The cell type anno of bin50 ST data of NCC-BR14 sample 1 Expression Profiling 701.97 KB csv Controlled
OMIX004167-99 The cell type anno of bin50 ST data of NCC-BR11 sample 1 Expression Profiling 370.96 KB csv Controlled
OMIX004167-100 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR17 sample 1 Expression Profiling 213.94 MB rds Controlled
OMIX004167-101 The cell type anno of bin50 ST data of NCC-BR8 sample 1 Expression Profiling 596.71 KB csv Controlled
OMIX004167-102 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR18 sample 1 Expression Profiling 513.63 MB rds Controlled
OMIX004167-103 The cell type anno of bin50 ST data of NCC-LN10 sample 1 Expression Profiling 735.83 KB csv Controlled
OMIX004167-104 The cell type anno of bin50 ST data of NCC-LN13 sample 1 Expression Profiling 577.42 KB csv Controlled
OMIX004167-105 The cell type anno of bin50 ST data of NCC-LN18 sample 1 Expression Profiling 706.49 KB csv Controlled
OMIX004167-106 The cell type anno of bin50 ST data of NCC-BR12 sample 1 Expression Profiling 770.41 KB csv Controlled
OMIX004167-107 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR5 sample 1 Expression Profiling 360.48 MB rds Controlled
OMIX004167-108 The cell type anno of bin50 ST data of NCC-BR16 sample 1 Expression Profiling 671.48 KB csv Controlled
OMIX004167-109 The cell type anno of bin50 ST data of NCC-BR22 sample 1 Expression Profiling 681.17 KB csv Controlled
OMIX004167-110 The cell type anno of bin50 ST data of NCC-BR5 sample 1 Expression Profiling 584.19 KB csv Controlled
OMIX004167-111 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR22 sample 1 Expression Profiling 1.14 GB rds Controlled
OMIX004167-112 The cell type anno of bin50 ST data of NCC-BR21 sample 1 Expression Profiling 730.68 KB csv Controlled
OMIX004167-113 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN5 sample 1 Expression Profiling 337.42 MB rds Controlled
OMIX004167-114 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN10 sample 1 Expression Profiling 468.64 MB rds Controlled
OMIX004167-115 The cell type anno of bin50 ST data of NCC-BR20 sample 1 Expression Profiling 675.29 KB csv Controlled
OMIX004167-116 The cell type anno of bin50 ST data of NCC-BR13 sample 1 Expression Profiling 741.51 KB csv Controlled
OMIX004167-117 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR23 sample 1 Expression Profiling 517.51 MB rds Controlled
OMIX004167-118 The cell type anno of bin50 ST data of NCC-BR23 sample 1 Expression Profiling 581.7 KB csv Controlled
OMIX004167-119 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-BR15 sample 1 Expression Profiling 321.01 MB rds Controlled
OMIX004167-120 The rds file containing matrix count and cell type anno of bin50 ST data of NCC-LN13 sample 1 Expression Profiling 570.07 MB rds Controlled
OMIX004167-121 Matrix file of scRNA-seq of library 1 of NCC-BR13 sample 1 Expression Profiling 35.02 MB matrix.mtx Controlled
OMIX004167-122 Barcodes file of scRNA-seq of library 2 of NCC-BR13 sample 1 Expression Profiling 13.99 KB tsv Controlled
OMIX004167-123 Barcodes file of scRNA-seq of library 2 of NCC-BR22 sample 1 Expression Profiling 19.93 KB tsv Controlled
OMIX004167-124 Matrix file of scRNA-seq of library 2 of NCC-BR21 sample 1 Expression Profiling 50.97 MB matrix.mtx Controlled
OMIX004167-125 Features file of scRNA-seq of library 1 of NCC-BR13 sample 1 Expression Profiling 156.03 KB tsv Controlled
OMIX004167-126 Features file of scRNA-seq of library 2 of NCC-BR12 sample 1 Expression Profiling 175.86 KB tsv Controlled
OMIX004167-127 Matrix file of scRNA-seq of library 2 of NCC-BR22 sample 1 Expression Profiling 45.49 MB matrix.mtx Controlled
OMIX004167-128 Barcodes file of scRNA-seq of library 2 of NCC-BR21 sample 1 Expression Profiling 23.61 KB tsv Controlled
OMIX004167-129 Barcodes file of scRNA-seq of library 1 of NCC-BR22 sample 1 Expression Profiling 21.08 KB tsv Controlled
OMIX004167-130 Barcodes file of scRNA-seq of library 1 of NCC-BR12 sample 1 Expression Profiling 19.81 KB tsv Controlled
OMIX004167-131 Features file of scRNA-seq of library 2 of NCC-BR23 sample 1 Expression Profiling 173.86 KB tsv Controlled
OMIX004167-132 Features file of scRNA-seq of library 1 of NCC-BR22 sample 1 Expression Profiling 167.56 KB tsv Controlled
OMIX004167-133 Matrix file of scRNA-seq of library 1 of NCC-BR14 sample 1 Expression Profiling 49.15 MB matrix.mtx Controlled
OMIX004167-134 Barcodes file of scRNA-seq of library 1 of NCC-BR13 sample 1 Expression Profiling 14.49 KB tsv Controlled
OMIX004167-135 Barcodes file of scRNA-seq of library 2 of NCC-BR12 sample 1 Expression Profiling 20.73 KB tsv Controlled
OMIX004167-136 Matrix file of scRNA-seq of library 2 of NCC-BR23 sample 1 Expression Profiling 47.09 MB matrix.mtx Controlled
OMIX004167-137 Barcodes file of scRNA-seq of library 1 of NCC-BR23 sample 1 Expression Profiling 22.52 KB tsv Controlled
OMIX004167-138 Barcodes file of scRNA-seq of library 2 of NCC-BR23 sample 1 Expression Profiling 22.19 KB tsv Controlled
OMIX004167-139 Features file of scRNA-seq of library 2 of NCC-BR13 sample 1 Expression Profiling 161.25 KB tsv Controlled
OMIX004167-140 Barcodes file of scRNA-seq of library 2 of NCC-BR14 sample 1 Expression Profiling 23.42 KB tsv Controlled
OMIX004167-141 Features file of scRNA-seq of library 1 of NCC-BR23 sample 1 Expression Profiling 176.22 KB tsv Controlled
OMIX004167-142 Matrix file of scRNA-seq of library 1 of NCC-BR12 sample 1 Expression Profiling 38.32 MB matrix.mtx Controlled
OMIX004167-143 Matrix file of scRNA-seq of library 1 of NCC-BR21 sample 1 Expression Profiling 44.69 MB matrix.mtx Controlled
OMIX004167-144 Matrix file of scRNA-seq of library 2 of NCC-BR14 sample 1 Expression Profiling 48.04 MB matrix.mtx Controlled
OMIX004167-145 Features file of scRNA-seq of library 2 of NCC-BR14 sample 1 Expression Profiling 183.4 KB tsv Controlled
OMIX004167-146 Matrix file of scRNA-seq of library 1 of NCC-BR23 sample 1 Expression Profiling 45.72 MB matrix.mtx Controlled
OMIX004167-147 Features file of scRNA-seq of library 2 of NCC-BR21 sample 1 Expression Profiling 164.87 KB tsv Controlled
OMIX004167-148 Barcodes file of scRNA-seq of library 1 of NCC-BR14 sample 1 Expression Profiling 25.18 KB tsv Controlled
OMIX004167-149 Features file of scRNA-seq of library 2 of NCC-BR22 sample 1 Expression Profiling 164.13 KB tsv Controlled
OMIX004167-150 Matrix file of scRNA-seq of library 2 of NCC-BR12 sample 1 Expression Profiling 39.45 MB matrix.mtx Controlled
OMIX004167-151 Barcodes file of scRNA-seq of library 1 of NCC-BR21 sample 1 Expression Profiling 21.32 KB tsv Controlled
OMIX004167-152 Features file of scRNA-seq of library 1 of NCC-BR14 sample 1 Expression Profiling 187.83 KB tsv Controlled
OMIX004167-153 Features file of scRNA-seq of library 1 of NCC-BR21 sample 1 Expression Profiling 159.59 KB tsv Controlled
OMIX004167-154 Matrix file of scRNA-seq of library 2 of NCC-BR13 sample 1 Expression Profiling 35.86 MB matrix.mtx Controlled
OMIX004167-155 Features file of scRNA-seq of library 1 of NCC-BR12 sample 1 Expression Profiling 171.98 KB tsv Controlled
OMIX004167-156 Matrix file of scRNA-seq of library 1 of NCC-BR22 sample 1 Expression Profiling 48.45 MB matrix.mtx Controlled
3Relevant Publications
Paper Title Journal Name Publish Time Accession Citing Type
AF9-KLF2 gene regulatory circuit links histone lactylation to metabolic reprogramming and breast cancer progression Cell Reports 2026-05 OMIX004167 Deposit
Spatially resolved atlas of breast cancer uncovers intercellular machinery of venular niche governing lymphocyte extravasation Nature Communications 2025-04 OMIX004167 Deposit
AF9/KLF2 gene regulatory circuit links histone lactylation to breast cancer metastasis BioRxiv 2025-06 OMIX004167 Deposit

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