OMIX005724

1Summary
Title Single-cell sequencing reveals alterations in the PBMC landscape and monocyte status during colorectal adenocarcinoma formation
Description We screened 5 healthy subjects, 5 adenoma patients and 5 early-stage adenocarcinoma patients who met the inclusion and exclusion criteria of endoscopic and pathological results. PBMC isolation and single-cell sequencing were performed using the peripheral blood from the patients. Further analysis was carried out on cell subsets. The PBMC scRNA-seq data were subjected to quality control. Expression of mitochondrial genes was concentrated in a certain area (less than 10% of the total number of genes) . After filtering of cells with a high mitochondrial gene ratio and a high erythrocyte gene ratio, a total of 110916 cells from 15 samples were analysed.
Organism Homo sapiens
Data Type Expression Profiling
Data Accessibility Controlled-access
BioProject PRJCA021923
Release Date 2024-03-26
Submitter Jiasheng Xu (1821286450@qq.com)
Organization The Second Affiliated Hospital, Zhejiang University School of Medicine
Submission Date 2024-01-22
2Files & Download

The data cannot be downloaded as it has not yet been registered in the Human Genetic Resource Management Platform of MOST.

File ID File Title Number/Samples File Type File Size File Suffix Download
OMIX005724-01 cytof-raw data 3 Expression Profiling 46.8 MB zip Unavailable
3Relevant Publications
Paper Title Journal Name Publish Time Accession Citing Type
Circulation immune cell landscape in canonical pathogenesis of colorectal adenocarcinoma by CyTOF analysis iScience 2024-02 OMIX005724 Deposit

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