| Title | poly(A) tail length of genes in plants |
|---|---|
| Description | We use FLEP-seq2 to profile full-length transcriptome of different tissues and species. The raw sequencing data generated in this study were deposited in China National Center for Bioinformation with accession PRJCA007575 and in NCBI with accession PRJNA788163. The dataset stored the alignment bam files and the mapping position, mapped gene, poly(A) tail length and splicing status of each reads. |
| Organism | Arabidopsis thaliana |
| Data Type | Mixed |
| Data Accessibility | Open-access |
| BioProject | PRJCA007575 |
| Release Date | 2022-06-15 |
| Submitter | Jinbu Jia (jiajinbu@qq.com) |
| Organization | South China Agricultural University |
| Submission Date | 2022-01-07 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX881-99-49 | bai file for all bam files | 1 | others | 11.03 MB | tar | |
| OMIX881-99-50 | read_info | 1 | others | 6.27 GB | tar | |
| OMIX881-20-51 | seed_rep1.bam | 1 | Transcriptomic | 3.55 GB | bam | |
| OMIX881-20-52 | rice_rep1.bam | 1 | Transcriptomic | 2.91 GB | bam | |
| OMIX881-20-53 | leaf_rep1.bam | 1 | Transcriptomic | 4.02 GB | bam | |
| OMIX881-20-54 | root_rep2.bam | 1 | Transcriptomic | 3.42 GB | bam | |
| OMIX881-20-55 | ath_nuc.bam | 1 | Transcriptomic | 2.15 GB | bam | |
| OMIX881-20-56 | inflorescence_rep2.bam | 1 | Transcriptomic | 3.82 GB | bam | |
| OMIX881-20-57 | maize_rep1.bam | 1 | Transcriptomic | 4.56 GB | bam | |
| OMIX881-20-58 | inflorescence_rep1.bam | 1 | Transcriptomic | 3.51 GB | bam | |
| OMIX881-20-59 | shoot_rep2.bam | 1 | Transcriptomic | 3.13 GB | bam | |
| OMIX881-20-60 | pollen_rep2.bam | 1 | Transcriptomic | 4.2 GB | bam | |
| OMIX881-20-61 | pacbio.seedling_rep1.bam | 1 | Transcriptomic | 177.94 MB | bam | |
| OMIX881-20-62 | pacbio.seedling_rep2.bam | 1 | Transcriptomic | 261.64 MB | bam | |
| OMIX881-20-63 | root_rep1.bam | 1 | Transcriptomic | 2.09 GB | bam | |
| OMIX881-20-64 | rice_rep2.bam | 1 | Transcriptomic | 3.44 GB | bam | |
| OMIX881-20-65 | leaf_rep2.bam | 1 | Transcriptomic | 4.42 GB | bam | |
| OMIX881-20-66 | maize_rep2.bam | 1 | Transcriptomic | 3.16 GB | bam | |
| OMIX881-20-67 | maize_nuc.bam | 1 | Transcriptomic | 2.69 GB | bam | |
| OMIX881-20-68 | seedling_rep1.bam | 1 | Transcriptomic | 4.07 GB | bam | |
| OMIX881-20-69 | upf1upf3.bam | 1 | Transcriptomic | 1.61 GB | bam | |
| OMIX881-20-70 | seedling_rep2.bam | 1 | Transcriptomic | 3.89 GB | bam | |
| OMIX881-20-71 | soybean_rep2.bam | 1 | Transcriptomic | 3 GB | bam | |
| OMIX881-20-72 | rice_nuc.bam | 1 | Transcriptomic | 1.63 GB | bam | |
| OMIX881-20-73 | soybean_rep1.bam | 1 | Transcriptomic | 3.97 GB | bam | |
| OMIX881-20-74 | shoot_rep1.bam | 1 | Transcriptomic | 3.44 GB | bam | |
| OMIX881-20-75 | soybean_nuc.bam | 1 | Transcriptomic | 3.21 GB | bam | |
| OMIX881-20-76 | seed_rep2.bam | 1 | Transcriptomic | 3.08 GB | bam | |
| OMIX881-20-77 | wt.bam | 1 | Transcriptomic | 1.64 GB | bam | |
| OMIX881-20-78 | pollen_rep1.bam | 1 | Transcriptomic | 3.75 GB | bam |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| An atlas of plant full-length RNA reveals tissue-specific and monocots–dicots conserved regulation of poly(A) tail length | Nature Plants | 2021-08 | OMIX881 | Deposit |