Yang Zhang
Engineer
Software & System Development
Email: zhangyang17m (AT) big.ac.cn
Tel:
Software & System Development
Email: zhangyang17m (AT) big.ac.cn
Tel:
EDUCATION
PhD in Bioinformatics, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2025
MS in Computer Technology, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2020
BS in Software Engineering, Nanjing University of Science and Technology, China, 2017
RESEARCH INTERESTS
Multi-omics Integration and Analysis
Omics Data Mining in Brain Diseases
Bioinformatics Tools Development
Machine Learning and Deep Mining
PROJECTS & RESOURCES
PUBLICATIONS
1. Li Q#, Zhang Y#, Luo S, Zhang Z, Oberg AL, Kozono DE, Lu H, Sarkaria JN, Ma L and Wang L (2024) Identify Non-mutational p53 Functional Deficiency in Human Cancers. Genomics Proteomics Bioinformatics, 10.1093/gpbjnl/qzae064. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-39325855
2. Zhao Y#, Zhang Y#, Li S, Tan S, Cao J, Wang HL, Luo J, Guo H, Zhang Z and Li Z (2024) Leaf Senescence Database v5.0: A Comprehensive Repository for Facilitating Plant Senescence Research. J Mol Biol, 436, 168530. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-38462130
3. Liu Y#, Zhang Y#, Liu X#, Shen Y#, Tian D, Yang X, Liu S, Ni L, Zhang Z, Song S and Tian Z (2023) SoyOmics: A deeply integrated database on soybean multi-omics. Mol Plant, 16, 794-797. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-36950735
4. Wang Z, Wang Y, Kasuga T, Lopez-Giraldez F, Zhang Y, Zhang Z, Wang Y, Dong C, Sil A, Trail F, Yarden O, Townsend J (2023) Lineage-specific genes are clustered with HET-domain genes and respond to environmental and genetic manipulations regulating reproduction in Neurospora[J]. PLoS Genetics, 19: e1011019.
5. Liu L#, Zhang Y#, Niu G#, Li Q, Li Z, Zhu T, Feng C, Liu X, Zhang Y, Xu T, Chen R, Teng X, Zhang R, Zou D, Ma L and Zhang Z (2022) BrainBase: a curated knowledgebase for brain diseases. Nucleic Acids Res, 50, D1131-D1138. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-34718720
6. Zhang Y# as co-first author in CNCB-NGDC Members & Partners (2022) Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. Nucleic Acids Res, 50, D27-D38. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-34718731
7. Cao J, Zhang Y, Tan S, Yang Q, Wang H-L, Xia X, Luo J, Guo H, Zhang Z and Li Z (2022) LSD 4.0: an improved database for comparative studies of leaf senescence. Molecular Horticulture, 2, 24.
8. Zhang Y# as co-first author in National Genomics Data Center Members and Partners (2020) Database Resources of the National Genomics Data Center in 2020[J]. Nucleic Acids Research, 48: D24-D33. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-31702008
9. Li Z#, Zhang Y#, Zou D, Zhao Y, Wang H, Zhang Y, Xia X, Luo J, Guo H, Zhang Z (2022) LSD 3.0: a comprehensive resource for the leaf senescence research community[J]. Nucleic Acids Research, 48: D1069-D1075. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-31599330
10. Li M#, Xia L#, Zhang Y, Niu G, Li M, Wang P, Zhang Y, Sang J, Zou D, Hu S, Hao L, Zhang Z (2019) Plant editosome database: a curated database of RNA editosome in plants[J]. Nucleic Acids Research, 47: D170-D174. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-30364952
11. Niu G#, Zou D#, Li M#, Zhang Y, Sang J, Xia L, Li M, Liu L, Cao J, Zhang Y, Wang P, Hu S, Hao L, Zhang Z (2019) Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human[J]. Nucleic Acids Research, 47: D78-D83. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-30357418
12. Sang J#, Wang Z#, Li M, Cao J, Niu G, Xia L, Zou D, Wang F, Xu X, Han X, Fan J, Yang Y, Zuo W, Zhang Y, Zhao W, Bao Y, Xiao J, Hu S, Hao L, Zhang Z (2018) ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization[J]. Nucleic Acids Research, 46: D121-D126. https://ngdc.cncb.ac.cn/openlb/publication/OLB-PM-29036693