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Welcome to RiceWiki 86,216 rice genes inside Contribute your efforts, further our knowledge.

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Chromosomes Databases

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Introduction RiceWiki, a project of IC4R (Information Commmons for Rice) as well as a component of ScienceWikis, is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice, viz., a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence to collect, edit and annotate information about rice, quantifies users' contributions in each annotated gene and provides explicit authorship for each contributor to encourage more participation from the whole scientific community. Welcome to join us ! Nothing great is ever accomplished in isolation. – Yo-Yo Ma Featured genes: Os01g0883800, Os02g0170300, Os03g0149100, Os08g0162100 Stress-related genes: a list of stress-related genes Genes to be curated: a list of genes to be curated Curated genes: More than 500 Rice Genes have been curated. Omics Knowledge Portal for Rice: Sharing and Integrating the precious omics knowledge for rice. Contribution score: quantified contributions by AuthorReward Literature: 31527 rice-related publications associated with rice genes Transcriptome: gene expression profiles at 22 developmental stages and tissue types based on RNA-Seq Variations: SNPs and INDELs (under collection)

RiceWiki: Omics Knowledge Portal for Rice (Updated on 25th Jun 2016) Omics is a discipline of science and engineering for analyzing the functions and interactions of biological information entities in various –ome layers(clusters) of life. It is involved with a series of state of the art technology for large-scale studies of genes (Genomics and Epigenomics), transcripts (transcriptomics:RNA-Seq,Microarray), proteins (proteomics), metabolites (metabolomics), lipids (lipidomics), interactions (interactomics) and phenotype (Phenomics). Omics aims at the collective characterization and quantification of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms. The main focus is on: 1) mapping information objects such as genes, proteins, and ligands; 2) finding interaction relationships among the objects; 3) engineering the networks and objects to understand and manipulate the regulatory mechanisms; and 4) integrating various omes and omics subfields." In order to make a comprehensive integration of published omics knowledge for rice, here we establish Omics Knowledge Portal for Rice (OKP4R) in RiceWiki. We invite concerned biologits all around the world to join this the portal to share the precious related knowledge. (More...)

Rice Genome Overview Oryza sativa Japonica Group Chromosome 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. Mt. Pd Oryza sativa Indica Group Chromosome 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12

Rice Story As an important food Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 (Full article...). As a biological model Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, indica and japonica, were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution. Recent Modified Genes Template:StatisticsActivity:type=edits Highly Accessed Genes Template:StatisticsActivity:type=visits Most Annotated Genes Template:StatisticsActivity:type=contributes

Publications Information Commons for Rice (IC4R) (2016) Nucleic Acids Research, 44(D1):D1172-D1180. RiceWiki: a wiki-based database for community curation of rice genes (2014) Nucleic Acids Research, 42(D1),D1222-D1228. AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification (2013) Bioinformatics, 29(14):1837-1839.

Joining RiceWiki RiceWiki allows any user to view and search but only registered users can add and edit content. To become a registered user, please email the RiceWiki Team at ricewiki@big.ac.cn to tell us your preferred login name, real name, research interests, etc., and we will set up an account for you. Please also spread this news to any one who might be of interest.

About Us Our group works in the field of Computational Biology and Bioinformatics (CBB), currently with a particular focus on building biological knowledge wikis in aid of community curation of massive biological knowledge.

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2015 RiceWiki Community Curation Awards 为鼓励更多科研人员和学生参与水稻基因的审编工作，促进我国面向生物大数据的基础性研究人才培养，RiceWiki对符合参选资格条件的个人给予奖励，具体方法如下： 本条例的有关奖项按年度进行评奖。 参选资格条件：在2015年（即2015年1月1日至2015年12月31日）参与审编工作的个人（不包括RiceWiki团队中成员），其在本年度的总贡献值（Contribution Score）大于或等于50分（ 用户贡献值查询）。 符合上述参选资格条件的个人将在2016年1月集中进行评审。 通过评审且贡献值最高的个人，免费获赠小米平板及荣誉证书；凡是通过评审的个人，免费获赠小米随身WiFi及荣誉证书。 上述获奖信息将在RiceWiki网站进行公示。 本条例的解释权属RiceWiki团队。

致全体参与者 群体审编（Community Curation）是生物大数据整合和相关文献信息集成的重要方法之一（相关信息：国际生物审编协会；Big data: The future of biocuration）。 水稻是我国最重要的经济农作物之一，其数据知识库的建立可有利推动我国水稻的科学研究与应用转化，并影响国内其它相关领域的基础研究。 我国长期缺乏一个在国际上有一定影响力的数据库/中心，美国有NCBI，欧洲有EBI...... 但是，你们现在所作的一点一滴正在改变这个现状，我们正在朝向建立面向我国重大需求且不同于现今国际生物数据中心的方向前进！

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