Introduction

SUMMARY: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses. AVAILABILITY: SmashCommunity source code and documentation are available at http://www.bork.embl.de/software/smash CONTACT: bork@embl.de SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Publications

  1. SmashCommunity: a metagenomic annotation and analysis tool.
    Cite this
    Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P, 2010-12-01 - Bioinformatics (Oxford, England)

Credits

  1. Manimozhiyan Arumugam
    Developer

  2. Eoghan D Harrington
    Developer

  3. Konrad U Foerstner
    Developer

  4. Jeroen Raes
    Developer

  5. Peer Bork
    Investigator

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Summary
AccessionBT000160
Tool TypeApplication
Category
PlatformsLinux/Unix
Technologies
User InterfaceTerminal Command Line
Download Count0
Submitted ByPeer Bork