Introduction

Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org.

Publications

  1. Jalview Version 2--a multiple sequence alignment editor and analysis workbench.
    Cite this
    Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ, 2009-05-01 - Bioinformatics (Oxford, England)
  2. The Jalview Java alignment editor.
    Cite this
    Clamp M, Cuff J, Searle SM, Barton GJ, 2004-02-01 - Bioinformatics (Oxford, England)

Credits

  1. Andrew M Waterhouse
    Developer

    School of Life Sciences Research, College of Life Sciences

  2. James B Procter
    Developer

  3. David M A Martin
    Developer

  4. Michèle Clamp
    Developer

  5. Geoffrey J Barton
    Investigator

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Summary
AccessionBT000509
Tool TypeApplication
Category
PlatformsLinux/Unix
Technologies
User InterfaceTerminal Command Line
Download Count0
Submitted ByGeoffrey J Barton