Introduction

Interpretation and communication of genomic data require flexible and quantitative tools to analyze and visualize diverse data types, and yet, a comprehensive tool to display all common genomic data types in publication quality figures does not exist to date. To address this shortcoming, we present Sushi.R, an R/Bioconductor package that allows flexible integration of genomic visualizations into highly customizable, publication-ready, multi-panel figures from common genomic data formats including Browser Extensible Data (BED), bedGraph and Browser Extensible Data Paired-End (BEDPE). Sushi.R is open source and made publicly available through GitHub (https://github.com/dphansti/Sushi) and Bioconductor (http://bioconductor.org/packages/release/bioc/html/Sushi.html).

Publications

  1. Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.
    Cite this
    Phanstiel DH, Boyle AP, Araya CL, Snyder MP, 2014-10-01 - Bioinformatics (Oxford, England)

Credits

  1. Douglas H Phanstiel
    Developer

    Department of Genetics, Stanford University School of Medicine, United States of America

  2. Alan P Boyle
    Developer

    Department of Genetics, Stanford University School of Medicine, United States of America

  3. Carlos L Araya
    Developer

    Department of Genetics, Stanford University School of Medicine, United States of America

  4. Michael P Snyder
    Investigator

    Department of Genetics, Stanford University School of Medicine, United States of America

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Summary
AccessionBT000806
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesR
User InterfaceTerminal Command Line
Download Count0
Country/RegionUnited States of America
Submitted ByMichael P Snyder